Motif HL_63894.1 Version HL_63894.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9AXU_004 | 9AXU | 0.4905 | 2 | 2 | LSU rRNA | A | 133 | U | 134 | U | 135 | U | 136 | C | 137 | U | 140 | U | 141 | cWW | |||
| 2 | HL_8GLP_027 | 8GLP | 0.3271 | 1 | L5 | LSU rRNA | C | 1816 | U | 1817 | G | 1818 | G | 1819 | C | 1820 | U | 1822 | G | 1823 | cWW | cwW | ||
| 3 | HL_8P9A_120 | 8P9A | 0.1087 | 3 | T-loop related | AR | LSU rRNA | U | 278 | U | 279 | U | 280 | G | 281 | G | 282 | U | 286 | G | 287 | cWW | cwW | |
| 4 | HL_9AXU_008 | 9AXU | 0.1120 | 3 | 2 | LSU rRNA | U | 286 | U | 287 | U | 288 | G | 289 | G | 290 | U | 294 | G | 295 | cWW | cwW | ||
| 5 | HL_8OI5_008 | 8OI5 | 0.1029 | 3 | 1 | LSU rRNA | U | 278 | U | 279 | U | 280 | G | 281 | G | 282 | U | 286 | G | 287 | cWW | cwW | ||
| 6 | HL_8GLP_008 | 8GLP | 0.0000 | 3 | L5 | LSU rRNA | C | 289 | U | 290 | U | 291 | G | 292 | G | 293 | U | 297 | G | 298 | cWW | cwW | ||
| 7 | HL_9AXU_022 | 9AXU | 0.1188 | 1 | T-loop related (H) | 2 | LSU rRNA | C | 1108 | U | 1109 | U | 1110 | A | 1111 | A | 1112 | U | 1114 | G | 1115 | cWW | cwW | |
| 8 | HL_8P9A_136 | 8P9A | 0.1223 | 1 | T-loop related | AR | LSU rRNA | C | 1076 | U | 1077 | U | 1078 | A | 1079 | A | 1080 | U | 1082 | G | 1083 | cWW | cwW | |
| 9 | HL_8OI5_023 | 8OI5 | 0.1804 | 1 | 1 | LSU rRNA | C | 1072 | U | 1073 | U | 1074 | A | 1075 | A | 1076 | U | 1078 | G | 1079 | cWW | cwW | ||
| 10 | HL_8P9A_218 | 8P9A | 0.1636 | 1 | T-loop related | sR | SSU rRNA | C | 1309 | U | 1310 | U | 1311 | A | 1312 | A | 1313 | U | 1315 | G | 1316 | cWW | cwW | |
| 11 | HL_8CRE_219 | 8CRE | 0.1480 | 1 | T-loop related | CM | SSU rRNA | C | 1294 | U | 1295 | U | 1296 | A | 1297 | A | 1298 | U | 1300 | G | 1301 | cWW | cwW | |
| 12 | HL_8B0X_022 | 8B0X | 0.1194 | 1 | T-loop related (H) | A | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | U | 1095 | C | 1096 | cWW | cwW | |
| 13 | HL_4LFB_025 | 4LFB | 0.1396 | 1 | T-loop related | A | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | U | 1095 | C | 1096 | cWW | cwW | |
| 14 | HL_8GLP_111 | 8GLP | 0.3155 | 1 | S2 | SSU rRNA | G | 1366 | PSU | 1367 | U | 1368 | A | 1369 | A | 1370 | U | 1372 | C | 1373 | cWW | cwW | ||
| 15 | HL_1QTQ_002 | 1QTQ | 0.5571 | 2 | tRNA anticodon loop with synthetase | B | tRNA | A | 931 | U | 932 | U | 933 | U | 935 | A | 937 | U | 938 | U | 939 | cWW | tSH | |
| 16 | HL_4JXZ_002 | 4JXZ | 0.5615 | 2 | tRNA anticodon loop with synthetase | B | tRNA | U | 931 | U | 932 | U | 933 | U | 935 | A | 937 | U | 938 | A | 939 | cWW | ntSH | |
| 17 | HL_6GSK_204 | 6GSK | 0.7230 | 2 | T-loop | 1K | tRNA | G | 53 | 5MU | 54 | PSU | 55 | G | 57 | A | 58 | U | 60 | C | 61 | ncWW | ntWH | |
| 18 | HL_4WF9_019 | 4WF9 | 0.6390 | 2 | Other HL | X | LSU rRNA | C | 654 | A | 655 | G | 656 | U | 657 | A | 659 | U | 661 | G | 662 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAAUUG | 5 |
| UUUGGGAAUG | 3 |
| GUUAAGUC | 2 |
| AUUUCUUUU | 1 |
| CUGGCGUG | 1 |
| CUUGGGAAUG | 1 |
| GUAAUUC | 1 |
| AUUCUGAUU | 1 |
| UUUUUGAUA | 1 |
| G(5MU)(PSU)CGACUC | 1 |
| CAGUAAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAUU | 5 |
| UUGGGAAU | 4 |
| UUAAGU | 2 |
| UUUCUUU | 1 |
| UGGCGU | 1 |
| (PSU)UAAUU | 1 |
| UUCUGAU | 1 |
| UUUUGAU | 1 |
| (5MU)(PSU)CGACU | 1 |
| AGUAAAU | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- T-loop related (5)
- tRNA anticodon loop with synthetase (2)
- T-loop related (H) (2)
- Other HL (1)
- T-loop (1)
- Basepair signature
- cWW-cWW-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.39 | Max 0.92
Coloring options: