Motif HL_64188.1 Version HL_64188.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6UFH_003 | 6UFH | 0.5918 | 1 | A | RNA (167-MER) | G | 70 | U | 72 | U | 73 | G | 74 | G | 75 | C | 76 | C | 77 | cWW | |||
| 2 | HL_5VPO_138 | 5VPO | 0.5401 | 1 | XV | P-site ASL SufA6 | U | 32 | U | 33 | C | 34 | G | 35 | G | 36 | 1MG | 37 | A | 39 | ncWW | |||
| 3 | HL_3LA5_002 | 3LA5 | 0.1578 | 1 | A | Purine riboswitch | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | |||
| 4 | HL_3RKF_008 | 3RKF | 0.1254 | 1 | C | Guanine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | ||
| 5 | HL_4FEN_002 | 4FEN | 0.0000 | 1 | B | A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | ||
| 6 | HL_1Y27_002 | 1Y27 | 0.0614 | 1 | X | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | |||
| 7 | HL_1Y26_002 | 1Y26 | 0.0595 | 1 | X | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | ||
| 8 | HL_4XNR_002 | 4XNR | 0.0725 | 1 | X | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | ||
| 9 | HL_4LX6_002 | 4LX6 | 0.1232 | 1 | A | Purine riboswitch | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | |||
| 10 | HL_7TZS_001 | 7TZS | 0.4934 | 0 | X | TPP riboswitch (THI element) | C | 27 | U | 28 | G | 29 | C | 30 | G | 31 | U | 32 | G | 33 | cWW | tWW | ||
| 11 | HL_6UFH_001 | 6UFH | 0.7063 | 1 | A | RNA (167-MER) | G | 13 | C | 14 | A | 16 | U | 17 | C | 18 | A | 19 | C | 20 | cWW | |||
| 12 | HL_3OXE_001 | 3OXE | 0.7187 | 1 | A | domain II of glycine riboswitch | G | 17 | U | 19 | U | 20 | A | 21 | A | 22 | U | 23 | C | 24 | cWW | |||
| 13 | HL_8H1B_001 | 8H1B | 0.7499 | 2 | tRNA anticodon loop | C | RNA (17-mer) | A | 31 | C | 32 | U | 35 | G | 36 | A | 37 | C | 38 | U | 39 | cWW | ncWB | |
| 14 | HL_8H0S_002 | 8H0S | 0.8139 | 2 | tRNA anticodon loop | Y | RNA (17-mer) | A | 31 | C | 32 | U | 35 | G | 36 | A | 37 | C | 38 | U | 39 | cWW | ncWB | |
| 15 | HL_6MPI_033 | 6MPI | 0.6635 | 2 | tRNA anticodon loop | X | tRNA ASL Escherichia coli Arg1 | G | 31 | RSP | 32 | U | 33 | G | 36 | A | 37 | A | 38 | C | 39 | cWW | ||
| 16 | HL_6MKN_034 | 6MKN | 0.6760 | 2 | tRNA anticodon loop | X | tRNA ASL Escherichia coli Arg2 | G | 31 | C | 32 | U | 33 | G | 36 | A | 37 | A | 38 | C | 39 | cWW | ||
| 17 | HL_7A0S_029 | 7A0S | 0.6989 | 1 | X | LSU rRNA | C | 1103 | G | 1104 | U | 1105 | A | 1107 | U | 1108 | A | 1109 | G | 1110 | cWW | ntSH | ||
| 18 | HL_4V9F_049 | 4V9F | 0.8798 | 1 | GNRA related | 0 | LSU rRNA | C | 1916 | G | 1917 | U | 1918 | C | 1920 | A | 1921 | A | 1922 | G | 1923 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUCUAC | 5 |
| GCUUCCAC | 2 |
| ACUUUGACU | 2 |
| GGUUGGCC | 1 |
| UUCGGGA | 1 |
| CUGCGUG | 1 |
| GCGAUCAC | 1 |
| GUUUAAUC | 1 |
| G(RSP)U(I)CGAAC | 1 |
| GCU(I)CGAAC | 1 |
| CGUAAUAG | 1 |
| CGUACAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUCUA | 5 |
| CUUCCA | 2 |
| CUUUGAC | 2 |
| GUUGGC | 1 |
| UCGG(1MG)G | 1 |
| UGCGU | 1 |
| CGAUCA | 1 |
| UUUAAU | 1 |
| (RSP)U(I)CGAA | 1 |
| CU(I)CGAA | 1 |
| GUAAUA | 1 |
| GUACAA | 1 |
- Annotations
-
- (13)
- tRNA anticodon loop (4)
- GNRA related (1)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.55 | Max 0.98
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