#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 61-62-42-5
1 HL_6OL3_0016OL30.87621Other HLC VA RNAG64A66C67C68C69C70cWWntSW
2 HL_3IGI_0093IGI0.86890Other HLAGroup IIC intronC368G369A370A371C372G373cWWtSW
3 HL_4KZD_0014KZD0.04051Fab BL3-6 binding hairpin with tSWRRNA (84-MER)G37A39A40C41A42C43cWWtSW
4 HL_6DB9_0016DB90.00001Fab BL3-6 binding hairpin with tSWRRNA (60-MER)G23A25A26C27A28C29cWWtSW
5 HL_3IVK_0033IVK0.08431Fab BL3-6 binding hairpin with tSWMclass I ligase productG59A61A62C63A64C65cWWtSW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAACAC3
GAACCCC1
CGAACG1
Non-Watson-Crick part of the motif
SequenceCounts
AAACA3
AACCC1
GAAC1

Release history

Release3.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.76
Date2019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-08
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Fab BL3-6 binding hairpin with tSW (3)
  • Other HL (2)
  • Basepair signature
    cWW-tSW-R-R
    Heat map statistics
    Min 0.04 | Avg 0.48 | Max 0.90
    Help

    Coloring options:

    HL_6OL3_001:HL_6OL3_001 = 0HL_6OL3_001:HL_3IGI_009 = 0.5683HL_6OL3_001:HL_4KZD_001 = 0.8773HL_6OL3_001:HL_6DB9_001 = 0.8762HL_6OL3_001:HL_3IVK_003 = 0.8806HL_3IGI_009:HL_6OL3_001 = 0.5683HL_3IGI_009:HL_3IGI_009 = 0HL_3IGI_009:HL_4KZD_001 = 0.8622HL_3IGI_009:HL_6DB9_001 = 0.8689HL_3IGI_009:HL_3IVK_003 = 0.8992HL_4KZD_001:HL_6OL3_001 = 0.8773HL_4KZD_001:HL_3IGI_009 = 0.8622HL_4KZD_001:HL_4KZD_001 = 0HL_4KZD_001:HL_6DB9_001 = 0.0405HL_4KZD_001:HL_3IVK_003 = 0.0935HL_6DB9_001:HL_6OL3_001 = 0.8762HL_6DB9_001:HL_3IGI_009 = 0.8689HL_6DB9_001:HL_4KZD_001 = 0.0405HL_6DB9_001:HL_6DB9_001 = 0HL_6DB9_001:HL_3IVK_003 = 0.0843HL_3IVK_003:HL_6OL3_001 = 0.8806HL_3IVK_003:HL_3IGI_009 = 0.8992HL_3IVK_003:HL_4KZD_001 = 0.0935HL_3IVK_003:HL_6DB9_001 = 0.0843HL_3IVK_003:HL_3IVK_003 = 0HL_6OL3_001HL_3IGI_009HL_4KZD_001HL_6DB9_001HL_3IVK_003Discrepancy0.000.200.400.600.80
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