Motif HL_69774.3 Version HL_69774.3 of this group appears in releases 3.21 to 3.76

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6	1-6	2-4	2-5
1	HL_6OL3_001	6OL3	0.8762	1	Other HL	C	VA RNA	G	64	A	66	C	67	C	68	C	69	C	70	cWW	ntSW
2	HL_3IGI_009	3IGI	0.8689	0	Other HL	A	Group II catalytic intron D1-D4-3	C	368	G	369	A	370	A	371	C	372	G	373	cWW		tSW
3	HL_4KZD_001	4KZD	0.0405	1	Fab BL3-6 binding hairpin with tSW	R	RNA (84-MER)	G	37	A	39	A	40	C	41	A	42	C	43	cWW		tSW
4	HL_6DB9_001	6DB9	0.0000	1	Fab BL3-6 binding hairpin with tSW	R	RNA (60-MER)	G	23	A	25	A	26	C	27	A	28	C	29	cWW		tSW
5	HL_3IVK_003	3IVK	0.0843	1	Fab BL3-6 binding hairpin with tSW	M	class I ligase product	G	59	A	61	A	62	C	63	A	64	C	65	cWW		tSW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAACAC	3
GAACCCC	1
CGAACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAACA	3
AACCC	1
GAAC	1

Release history

Release	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Fab BL3-6 binding hairpin with tSW (3)
Other HL (2)
Basepair signature: cWW-tSW-R-R
Heat map statistics: Min 0.04 | Avg 0.48 | Max 0.90

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Coloring options: Nucleotide numbers

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