Motif HL_69774.3 Version HL_69774.3 of this group appears in releases 3.21 to 3.76

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	1-6	2-4	2-5
1	HL_6OL3_001	6OL3	0.8762	1		C	VA RNA	G	64	A	66	C	67	C	68	C	69	C	70	cWW	ntSW
2	HL_3IGI_009	3IGI	0.8689	0		A	Group IIC intron	C	368	G	369	A	370	A	371	C	372	G	373	cWW		tSW
3	HL_4KZD_001	4KZD	0.0405	1		R	RNA (84-MER)	G	37	A	39	A	40	C	41	A	42	C	43	cWW		tSW
4	HL_6DB9_001	6DB9	0.0000	1		R	RNA (60-MER)	G	23	A	25	A	26	C	27	A	28	C	29	cWW		tSW
5	HL_3IVK_003	3IVK	0.0843	1		M	class I ligase product	G	59	A	61	A	62	C	63	A	64	C	65	cWW		tSW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAACAC	3
GAACCCC	1
CGAACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAACA	3
AACCC	1
GAAC	1

Release history

Release	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations
Basepair signature: cWW-tSW-R-R
Heat map statistics: Min 0.04 | Avg 0.48 | Max 0.90

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Coloring options: Nucleotide numbers

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