Motif HL_71170.1 Version HL_71170.1 of this group appears in releases 3.85 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-5 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1QTQ_002 | 1QTQ | 0.0000 | 1 | B | tRNA | A | 931 | U | 932 | U | 933 | C | 934 | U | 935 | A | 937 | U | 938 | U | 939 | cWW | tSH | |||
| 2 | HL_4JXZ_002 | 4JXZ | 0.1559 | 1 | B | RNA (71-MER) | U | 931 | U | 932 | U | 933 | U | 934 | U | 935 | A | 937 | U | 938 | A | 939 | cWW | ntSH | |||
| 3 | HL_4WF9_041 | 4WF9 | 0.4670 | 0 | X | LSU rRNA | G | 1761 | U | 1762 | U | 1763 | A | 1764 | A | 1765 | C | 1766 | G | 1767 | C | 1768 | cWW | ncWW | ntsS | ||
| 4 | HL_1J2B_001 | 1J2B | 0.5176 | 1 | C | tRNA(Val) | C | 932 | C | 933 | U | 934 | A | 936 | C | 937 | G | 938 | A | 939 | G | 940 | cWW | cWW | |||
| 5 | HL_2D6F_005 | 2D6F | 0.5219 | 1 | F | tRNA | G | 931 | C | 932 | U | 933 | U | 934 | G | 936 | G | 937 | A | 938 | C | 939 | cWW | cWW | |||
| 6 | HL_5UD5_002 | 5UD5 | 0.5800 | 1 | C | tRNA | A | 31 | C | 32 | U | 33 | C | 34 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | ntSH | ||
| 7 | HL_4V9F_032 | 4V9F | 0.6186 | 1 | GNRA with CC cWW pair | 0 | LSU rRNA | A | 1274 | C | 1275 | U | 1276 | C | 1277 | A | 1278 | A | 1280 | C | 1281 | U | 1282 | cWW | cWB | ntSH | |
| 8 | HL_7QR8_003 | 7QR8 | 0.5495 | 0 | A | PTPRC sgRNA | U | 71 | U | 72 | G | 73 | A | 74 | A | 75 | A | 76 | A | 77 | A | 78 | cWW | ntSH | |||
| 9 | HL_3RG5_006 | 3RG5 | 0.5467 | 1 | B | Selenocysteine transfer RNA | G | 31 | C | 32 | U | 33 | C | 35 | A | 36 | A | 37 | A | 38 | C | 39 | cWW | cWW | |||
| 10 | HL_8KAL_001 | 8KAL | 0.6189 | 0 | A | RNA (98-MER) | U | 31 | A | 32 | G | 33 | A | 34 | A | 35 | A | 36 | U | 37 | A | 38 | ncWW | ||||
| 11 | HL_3W3S_002 | 3W3S | 0.5478 | 1 | tRNA anticodon loop | B | Selenocysteine transfer RNA | A | 31 | C | 32 | U | 33 | C | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | ||
| 12 | HL_7PMQ_003 | 7PMQ | 0.6582 | 0 | F | RNA (42-MER) | G | 8 | U | 9 | U | 10 | U | 11 | C | 12 | G | 13 | A | 14 | C | 15 | cWW | ||||
| 13 | HL_2ZNI_002 | 2ZNI | 0.7577 | 1 | C | bacterial tRNA | A | 31 | C | 32 | U | 33 | U | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACUCUAAAU | 2 |
| AUUCUGAUU | 1 |
| UUUUUGAUA | 1 |
| GUUAACGC | 1 |
| CCUUACGAG | 1 |
| GCUUUGGAC | 1 |
| ACUCAUACU | 1 |
| UUGAAAAA | 1 |
| GCUUCAAAC | 1 |
| UAGAAAUA | 1 |
| ACUUCAAAU | 1 |
| GUUUCGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCUAAA | 2 |
| CUUCAAA | 2 |
| UUCUGAU | 1 |
| UUUUGAU | 1 |
| UUAACG | 1 |
| CUUACGA | 1 |
| CUUUGGA | 1 |
| CUCAUAC | 1 |
| UGAAAA | 1 |
| AGAAAU | 1 |
| UUUCGA | 1 |
- Annotations
-
- tRNA anticodon loop (1)
- GNRA with CC cWW pair (1)
- Basepair signature
- cWW-cWW-F-F-F-F
- Heat map statistics
- Min 0.16 | Avg 0.45 | Max 0.76
Coloring options: