Motif HL_72543.2 Version HL_72543.2 of this group appears in releases 1.1 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5H_027 | 3U5H | 0.3787 | 1 | 5 | LSU rRNA | C | 1239 | A | 1240 | U | 1241 | G | 1242 | G | 1243 | A | 1244 | G | 1246 | U | 1247 | C | 1248 | G | 1249 | cWW | |
| 2 | HL_1QA6_001 | 1QA6 | 0.1094 | 1 | C | LSU rRNA | C | 114 | U | 115 | U | 116 | A | 117 | G | 118 | A | 119 | G | 121 | C | 122 | A | 123 | G | 124 | cWW | |
| 3 | HL_2QBG_030 | 2QBG | 0.0000 | 1 | B | LSU rRNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | G | 1071 | C | 1072 | A | 1073 | G | 1074 | cWW | |
| 4 | HL_4IOA_028 | 4IOA | 0.2972 | 1 | X | LSU rRNA | C | 1075 | U | 1076 | U | 1077 | A | 1078 | G | 1079 | A | 1080 | G | 1082 | C | 1083 | A | 1084 | G | 1085 | ||
| 5 | HL_1S72_030 | 1S72 | 0.4231 | 1 | 0 | LSU rRNA | C | 1168 | U | 1169 | U | 1170 | A | 1171 | G | 1172 | A | 1173 | G | 1175 | C | 1176 | A | 1177 | G | 1178 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAGAAGCAG | 4 |
| CAUGGAAGUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAGAAGCA | 4 |
| AUGGAAGUC | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_72543.2 | Only in the parent motif |
|---|---|---|---|
| HL_72543.1 Compare | HL_3U5H_027, HL_1S72_030, HL_2QBG_030, HL_1QA6_001 | HL_4IOA_028 | HL_2ZJR_028 |
Children motifs
| Child motif | Common motif instances | Only in HL_72543.2 | Only in the child motif |
|---|---|---|---|
| HL_72543.3 Compare | HL_3U5H_027, HL_1QA6_001, HL_2QBG_030, HL_4IOA_028, HL_1S72_030 | HL_4CUV_027 |
- Annotations
-
- (5)
- Basepair signature
- cWW-tSH-R-R-R-R-R-R
- Heat map statistics
- Min 0.11 | Avg 0.30 | Max 0.57
Coloring options: