Motif HL_72543.1 Version HL_72543.1 of this group appears in releases 0.3 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-6 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1S72_030 | 1S72 | 0.4231 | 1 | 0 | LSU rRNA | C | 1168 | U | 1169 | U | 1170 | A | 1171 | G | 1172 | A | 1173 | G | 1175 | C | 1176 | A | 1177 | G | 1178 | cWW | ncWW | |
| 2 | HL_1QA6_001 | 1QA6 | 0.1094 | 1 | C | 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN | C | 114 | U | 115 | U | 116 | A | 117 | G | 118 | A | 119 | G | 121 | C | 122 | A | 123 | G | 124 | cWW | ||
| 3 | HL_2QBG_030 | 2QBG | 0.0000 | 1 | B | 23S rRNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | G | 1071 | C | 1072 | A | 1073 | G | 1074 | cWW | ||
| 4 | HL_2ZJR_028 | 2ZJR | 0.2663 | 1 | X | LSU rRNA | C | 1075 | U | 1076 | U | 1077 | A | 1078 | G | 1079 | A | 1080 | G | 1082 | C | 1083 | A | 1084 | G | 1085 | cWW | ntWH | |
| 5 | HL_3U5H_027 | 3U5H | 0.3787 | 1 | 5 | 25S rRNA | C | 1239 | A | 1240 | U | 1241 | G | 1242 | G | 1243 | A | 1244 | G | 1246 | U | 1247 | C | 1248 | G | 1249 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAGAAGCAG | 4 |
| CAUGGAAGUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAGAAGCA | 4 |
| AUGGAAGUC | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_72543.1 | Only in the parent motif |
|---|---|---|---|
| HL_81943.1 Compare | HL_1QA6_001, HL_2ZJR_028 | HL_1S72_030, HL_2QBG_030, HL_3U5H_027 | HL_1QA6_004, HL_1QA6_002, HL_1QA6_003, HL_1S72_031, HL_2QBG_031, HL_1E8O_001, HL_1NBS_002, HL_2ZJR_029, HL_1MMS_003, HL_1MMS_002, HL_1MMS_001, HL_3PYO_022, HL_1MMS_004 |
| HL_06261.1 Compare | HL_2QBG_030, HL_1S72_030 | HL_3U5H_027, HL_1QA6_001, HL_2ZJR_028 | HL_2IL9_006, HL_2ZJR_055 |
Children motifs
| Child motif | Common motif instances | Only in HL_72543.1 | Only in the child motif |
|---|---|---|---|
| HL_72543.2 Compare | HL_3U5H_027, HL_1S72_030, HL_2QBG_030, HL_1QA6_001 | HL_2ZJR_028 | HL_4IOA_028 |
- Annotations
-
- (5)
- Basepair signature
- cWW-tSH-R-R-R-R-R-R
- Heat map statistics
- Min 0.11 | Avg 0.29 | Max 0.57
Coloring options: