Motif HL_73266.7 Version HL_73266.7 of this group appears in releases 3.89 to 3.93

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	1-9	2-8	3-7	4-5
1	HL_7KVT_002	7KVT	0.1770	B	Squash RNA aptamer bound to DFHBI-1T with iridium (III) ions	G	55	C	56	C	57	U	58	U	59	A	60	A	61	A	62	C	63	cWW		ntSW	cSH
2	HL_1Y27_003	1Y27	0.1063	X	Purine riboswitch	A	59	C	60	C	61	G	62	U	63	A	64	A	65	A	66	U	67	cWW		cSW	cSH
3	HL_4FEN_003	4FEN	0.0835	B	A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain	A	59	C	60	C	61	G	62	U	63	A	64	A	65	A	66	U	67	cWW		cSW	cSH
4	HL_3LA5_003	3LA5	0.0807	A	Purine riboswitch	G	59	C	60	C	61	U	62	U	63	A	64	A	65	A	66	C	67	cWW		cSW	cSH
5	HL_5SWD_006	5SWD	0.0000	B	Purine riboswitch	G	59	C	60	C	61	U	62	U	63	A	64	A	65	A	66	C	67	cWW		cSW	cSH
6	HL_4LX6_003	4LX6	0.0908	A	Purine riboswitch	G	59	C	60	C	61	U	62	U	63	A	64	A	65	A	66	C	67	cWW		cSW	ncSH
7	HL_1Y26_003	1Y26	0.1491	X	Purine riboswitch	G	59	C	60	C	61	U	62	U	63	A	64	A	65	A	66	C	67	cWW		cSW
8	HL_4XNR_003	4XNR	0.1351	X	Purine riboswitch	G	59	C	60	C	61	U	62	U	63	A	64	A	65	A	66	C	67	cWW		cSW	cSH
9	HL_3RKF_009	3RKF	0.2026	C	Guanine riboswitch	A	59	C	60	U	61	G	62	U	63	A	64	A	65	A	66	U	67	cWW		ncSW	cSH
10	HL_5KPY_002	5KPY	0.1923	A	5-hydroxytryptophan RNA aptamer	A	59	C	60	C	61	G	62	U	63	A	64	A	65	A	66	U	67	cWW		cSW	cSH
11	HL_6MJ0_006	6MJ0	0.7356	B	tRNA-like 3' UTR element	U	12	C	13	U	14	U	15	U	16	A	17	A	18	A	19	A	20	cWW	cSW	ncSH

3D structures

Complete motif including flanking bases

Sequence	Counts
GCCUUAAAC	6
ACCGUAAAU	3
ACUGUAAAU	1
UCUUUAAAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
CCUUAAA	6
CCGUAAA	3
CUGUAAA	1
CUUUAAA	1

Release history

Release	3.89	3.90	3.91	3.92	3.93
Date	2024-10-09	2024-11-06	2024-12-04	2025-01-01	2025-01-29
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (11)
Basepair signature: cWW-cWW-cSW-cSH-F-F-F
Heat map statistics: Min 0.07 | Avg 0.23 | Max 0.75

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