#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 5 61-62-42-5
1 HL_3OIN_0013OIN0.68752CRNA (14-mer)C4U5A8A9C10G11cWW
2 HL_2A64_0062A640.57146A RNase P class BC313G314G321C322A323G324cWWntSH
3 HL_4LX6_0024LX60.12322Purine riboswitchAPurine riboswitchG46C47C50C51A52C53cWW
4 HL_4XNR_0024XNR0.07252Purine riboswitchXPurine riboswitchG46U47C50U51A52C53cWWntWH
5 HL_1Y26_0021Y260.05952Purine riboswitchXPurine riboswitchG46U47C50U51A52C53cWWntWH
6 HL_1Y27_0021Y270.06142Purine riboswitchXPurine riboswitchG46U47C50U51A52C53cWW
7 HL_4FEN_0024FEN0.00002Purine riboswitchBPurine riboswitchG46U47C50U51A52C53cWWntWH
8 HL_3RKF_0083RKF0.12542Purine riboswitchCPurine riboswitchG46U47C50U51A52C53cWWntWH
9 HL_3LA5_0023LA50.15782Purine riboswitchAPurine riboswitchG46C47C50C51A52C53cWW
10 HL_7TZS_0017TZS0.49341XTPP riboswitch (THI element)C27U28C30G31U32G33cWWtWW
11 HL_5VPO_1385VPO0.54012Pseudoknot geometryXVP-site ASL SufA6U32U33G35G361MG37A39ncWW
12 HL_6UFH_0036UFH0.59182Pseudoknot geometryARNA (167-MER)G70U72G74G75C76C77cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUUUCUAC5
GCUUCCAC2
CUUCAACG1
CGGCGCAUGCAG1
CUGCGUG1
UUCGGGA1
GGUUGGCC1
Non-Watson-Crick part of the motif
SequenceCounts
UUUCUA5
CUUCCA2
UUCAAC1
GGCGCAUGCA1
UGCGU1
UCGG(1MG)G1
GUUGGC1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Purine riboswitch (7)
  • (3)
  • Pseudoknot geometry (2)
  • Basepair signature
    cWW-F-F-F-F
    Heat map statistics
    Min 0.06 | Avg 0.41 | Max 0.87
    Help

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