Motif HL_74379.2 Version HL_74379.2 of this group appears in releases 3.90 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 3-7 | 4-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9DXL_003 | 9DXL | 0.1056 | 3 | A | RhoBAST aptamer | G | 26 | C | 27 | A | 28 | A | 29 | G | 30 | A | 34 | A | 35 | C | 36 | C | 37 | cWW | ncsS | ncSs |
| 2 | HL_9BUN_003 | 9BUN | 0.0000 | 3 | A | RNA (48-MER) | G | 26 | C | 27 | A | 28 | A | 29 | G | 30 | A | 34 | A | 35 | C | 36 | C | 37 | cWW | csS | cSs |
| 3 | HL_8JY0_003 | 8JY0 | 0.2633 | 3 | B | RhoBAST | G | 42 | C | 43 | A | 44 | A | 45 | G | 46 | A | 50 | A | 51 | C | 52 | C | 53 | cWW | csS | cSs |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAAGGUUAACC | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAGGUUAAC | 3 |
- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-cSS-cSS-F
- Heat map statistics
- Min 0.11 | Avg 0.16 | Max 0.33
Coloring options: