#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 71-72-6
1 HL_8C3A_0638C3A0.193411 LSU rRNAA2869C2871A2872G2873A2874A2875U2876cWW
2 HL_5TBW_0625TBW0.168711 LSU rRNAA2897C2899A2900G2901A2902A2903U2904cWW
3 HL_7A0S_0607A0S0.00001X LSU rRNAU2507A2509A2510G2511A2512A2513G2514cWW
4 HL_4V9F_0634V9F0.132710 LSU rRNAU2563C2565A2566G2567A2568A2569G2570cWW
5 HL_8VTW_0608VTW0.134311A LSU rRNAU2528A2530A2531G2532A2533A2534G2535cWW
6 HL_5J7L_1945J7L0.17471DA LSU rRNAU2528A2530A2531G2532U2533A2534G2535cWW
7 HL_4WF9_0574WF90.16291X LSU rRNAU2555U2557A2558G2559U2560C2561G2562cWW
8 HL_3OXE_0013OXE0.60171Adomain II of glycine riboswitchG17U19U20A21A22U23C24cWW
9 HL_4LCK_0024LCK0.67382B tRNAC30U31C34C35A36A37G38cWW
10 HL_6UFH_0016UFH0.70431ARNA (167-MER)G13C14A16U17C18A19C20cWW
11 HL_6UFG_0016UFG0.59251ARNA (166-MER)G13C14A16U17C18A19C20cWWntWW

3D structures

Complete motif including flanking bases
SequenceCounts
AGCAGAAU2
UGAAGAAG2
GCGAUCAC2
UGCAGAAG1
UGAAGUAG1
UGUAGUCG1
GUUUAAUC1
CUUGCCAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GCAGAA3
GAAGAA2
CGAUCA2
GAAGUA1
GUAGUC1
UUUAAU1
UUGCCAA1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (11)
  • Basepair signature
    cWW-F-F-F-F-F
    Heat map statistics
    Min 0.09 | Avg 0.41 | Max 0.72
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