Motif HL_83632.1 Version HL_83632.1 of this group appears in releases 3.89 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2IY5_002 | 2IY5 | 0.5333 | 1 | tRNA anticodon loop | T | tRNA | A | 31 | C | 32 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWB |
| 2 | HL_2ZNI_002 | 2ZNI | 0.4644 | 1 | C | bacterial tRNA | A | 31 | C | 32 | C | 34 | U | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | cWW | |
| 3 | HL_1J1U_002 | 1J1U | 0.2665 | 1 | tRNA anticodon loop | B | tRNA(Tyr) | A | 532 | C | 533 | G | 535 | U | 536 | A | 537 | G | 538 | A | 539 | U | 540 | cWW | ncWW |
| 4 | HL_2AKE_002 | 2AKE | 0.0000 | 1 | tRNA anticodon loop | B | tRNA | A | 31 | C | 32 | C | 34 | C | 35 | A | 36 | G | 37 | A | 38 | U | 39 | cWW | |
| 5 | HL_6UGG_005 | 6UGG | 0.2234 | 1 | tRNA anticodon loop | B | tRNA | C | 31 | C | 32 | G | 34 | U | 35 | C | 36 | A | 37 | C | 38 | G | 39 | cWW | ncWB |
| 6 | HL_4LCK_002 | 4LCK | 0.4726 | 1 | B | tRNA | C | 30 | U | 31 | G | 33 | C | 34 | C | 35 | A | 36 | A | 37 | G | 38 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACUGAAAAU | 1 |
| ACUCUAAAU | 1 |
| ACUGUAGAU | 1 |
| ACUCCAGAU | 1 |
| CCUGUCACG | 1 |
| CUUGCCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGAAAA | 1 |
| CUCUAAA | 1 |
| CUGUAGA | 1 |
| CUCCAGA | 1 |
| CUGUCAC | 1 |
| UUGCCAA | 1 |
- Annotations
-
- tRNA anticodon loop (4)
- (2)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.22 | Avg 0.44 | Max 0.98
Coloring options: