Motif HL_84031.1 Version HL_84031.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3PYO_054 | 3PYO | 0.2197 | 2 | A | LSU rRNA | C | 2264 | U | 2265 | A | 2266 | A | 2267 | A | 2269 | G | 2270 | G | 2271 | U | 2272 | A | 2273 | A | 2274 | G | 2276 | cWW | ntSH | tHH | tWW |
| 2 | HL_1S72_056 | 1S72 | 0.0000 | 2 | 0 | LSU rRNA | C | 2298 | G | 2299 | A | 2300 | A | 2301 | A | 2303 | G | 2304 | A | 2305 | U | 2306 | A | 2307 | U | 2308 | G | 2310 | cWW | tSH | tHH | tWW |
| 3 | HL_3O58_056 | 3O58 | 0.1558 | 2 | 1 | LSU rRNA | U | 2633 | U | 2634 | A | 2635 | A | 2636 | C | 2638 | G | 2639 | A | 2640 | U | 2641 | A | 2642 | A | 2643 | G | 2645 | cWW | ntHH | tWW | |
| 4 | HL_2ZJR_052 | 2ZJR | 0.1773 | 2 | X | LSU rRNA | C | 2243 | C | 2244 | A | 2245 | A | 2246 | A | 2248 | U | 2249 | G | 2250 | U | 2251 | A | 2252 | A | 2253 | G | 2255 | cWW | ntSH | ntHH | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAAAGGUAACG | 1 |
| CGAAAAGAUAUCG | 1 |
| UUAAACGAUAACG | 1 |
| CCAAAAUGUAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAAAGGUAAC | 1 |
| GAAAAGAUAUC | 1 |
| UAAACGAUAAC | 1 |
| CAAAAUGUAAC | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_84031.1 | Only in the child motif |
|---|---|---|---|
| HL_41833.1 Compare | HL_2ZJR_052, HL_1S72_056 | HL_3O58_056, HL_3PYO_054 | HL_3U5H_056, HL_3V2F_052, HL_2QBG_056, HL_4A1B_055 |
Coloring options: