Motif HL_85534.3 Version HL_85534.3 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5H_046 | 3U5H | 0.1832 | 4 | 5 | 25S rRNA | U | 2135 | C | 2136 | U | 2137 | U | 2141 | A | 2142 | A | 2143 | A | 2145 | cWW | tWH | tWH |
| 2 | HL_4CUV_046 | 4CUV | 0.1553 | 4 | 1 | 25S RRNA | U | 2135 | C | 2136 | U | 2137 | U | 2141 | A | 2142 | A | 2143 | A | 2145 | cWW | ntWH | ntWH |
| 3 | HL_1VW3_032 | 1VW3 | 0.0808 | 4 | A | 21S ribosomal RNA | U | 1684 | U | 1685 | U | 1686 | A | 1690 | A | 1691 | A | 1692 | A | 1694 | cWW | tWH | tWH |
| 4 | HL_4NVV_043 | 4NVV | 0.0000 | 4 | A | 23S Ribosomal RNA | U | 1808 | U | 1809 | U | 1810 | A | 1814 | A | 1815 | A | 1816 | A | 1818 | cWW | tWH | tWH |
| 5 | HL_4A1B_045 | 4A1B | 0.4152 | 4 | 1 | 26S RRNA | U | 2131 | U | 2132 | U | 2133 | A | 2137 | A | 2138 | A | 2139 | A | 2141 | cWW | tWH | |
| 6 | HL_2QBG_047 | 2QBG | 0.4305 | 4 | B | 23S rRNA | U | 1777 | U | 1778 | U | 1779 | A | 1783 | A | 1784 | A | 1785 | A | 1787 | cWW | tWH | |
| 7 | HL_1S72_047 | 1S72 | 0.4585 | 4 | 0 | LSU rRNA | U | 1833 | C | 1834 | U | 1835 | A | 1839 | A | 1840 | C | 1841 | A | 1843 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUAAUUAAAA | 2 |
| UUUACUAAAAA | 1 |
| UUUACCAAAAA | 1 |
| UUUAAUAAAAA | 1 |
| UUUAUUAAAAA | 1 |
| UCUAGUAACAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAAUUAAA | 2 |
| UUACUAAAA | 1 |
| UUACCAAAA | 1 |
| UUAAUAAAA | 1 |
| UUAUUAAAA | 1 |
| CUAGUAACA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_85534.3 | Only in the parent motif |
|---|---|---|---|
| HL_85534.2 Compare | HL_4A1B_045, HL_1S72_047, HL_4NVV_043, HL_1VW3_032, HL_2QBG_047, HL_3U5H_046 | HL_4CUV_046 |
Children motifs
| Child motif | Common motif instances | Only in HL_85534.3 | Only in the child motif |
|---|---|---|---|
| HL_85534.4 Compare | HL_4NVV_043, HL_1S72_047, HL_4CUV_046, HL_4A1B_045, HL_1VW3_032, HL_2QBG_047, HL_3U5H_046 | HL_1VWW_046, HL_1VX6_046 |
- Annotations
-
- (7)
- Basepair signature
- cWW-tWH-tWH-R
- Heat map statistics
- Min 0.08 | Avg 0.27 | Max 0.49
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