Motif HL_86398.2 Version HL_86398.2 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-9 | 3-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4CUX_010 | 4CUX | 0.1664 | 1 | 2 | 18S RRNA | C | 393 | C | 394 | U | 395 | G | 396 | A | 397 | G | 398 | A | 399 | A | 400 | A | 401 | C | 402 | G | 404 | cWW | tWH | |
| 2 | HL_3U5F_010 | 3U5F | 0.0000 | 1 | 6 | 18S rRNA | C | 393 | C | 394 | U | 395 | G | 396 | A | 397 | G | 398 | A | 399 | A | 400 | A | 401 | C | 402 | G | 404 | cWW | tWH | tWH |
| 3 | HL_4BPP_010 | 4BPP | 0.1660 | 1 | A | 18S RRNA | C | 384 | C | 385 | U | 386 | G | 387 | A | 388 | G | 389 | A | 390 | A | 391 | A | 392 | C | 393 | G | 395 | cWW | tWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUGAGAAACGG | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGAGAAACG | 3 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_86398.2 | Only in the parent motif |
|---|---|---|---|
| HL_86398.1 Compare | HL_4BPP_010, HL_3U5F_010 | HL_4CUX_010 |
Children motifs
| Child motif | Common motif instances | Only in HL_86398.2 | Only in the child motif |
|---|---|---|---|
| HL_94364.1 Compare | HL_4BPP_010, HL_3U5F_010, HL_4CUX_010 | HL_1VX2_009, HL_3J7A_008 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-tWH-R-tWH-R-R-R
- Heat map statistics
- Min 0.17 | Avg 0.12 | Max 0.19
Coloring options: