Motif HL_74686.1 Version HL_74686.1 of this group appears in releases 1.0 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2A64_006 | 2A64 | 0.8475 | 2 | A | ribonuclease P RNA | C | 313 | G | 314 | G | 317 | C | 318 | A | 319 | U | 320 | G | 321 | C | 322 | A | 323 | G | 324 | cWW | ntSH |
| 2 | HL_3T4B_003 | 3T4B | 0.0000 | 0 | A | HCV IRES pseudoknot domain plus crystallization module | C | 304 | U | 305 | U | 306 | G | 307 | C | 308 | G | 309 | A | 310 | G | 311 | U | 312 | G | 313 | cWW | ncWw |
| 3 | HL_2JLT_001 | 2JLT | 0.5587 | 0 | A | R06 | G | 5 | G | 6 | U | 7 | C | 8 | C | 9 | C | 10 | A | 11 | G | 12 | A | 13 | C | 14 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGCGCAUGCAG | 1 |
| CUUGCGAGUG | 1 |
| GGUCCCAGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGCGCAUGCA | 1 |
| UUGCGAGU | 1 |
| GUCCCAGA | 1 |
Release history
| Release | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_74686.1 | Only in the parent motif |
|---|---|---|---|
| HL_19261.1 Compare | HL_2JLT_001, HL_3T4B_003 | HL_2A64_006 | HL_3U5F_001, HL_1FJG_001, HL_2XZM_001 |
| HL_64371.1 Compare | HL_2A64_006 | HL_2JLT_001, HL_3T4B_003 | HL_3DHS_005, HL_3IVK_006 |
Children motifs
| Child motif | Common motif instances | Only in HL_74686.1 | Only in the child motif |
|---|---|---|---|
| HL_31318.1 Compare | HL_3T4B_003 | HL_2JLT_001, HL_2A64_006 | HL_3U5F_001, HL_4BPP_001, HL_1FJG_001, HL_1VW3_047 |
| HL_86889.1 Compare | HL_2JLT_001 | HL_3T4B_003, HL_2A64_006 | HL_1F27_001 |
| HL_64371.3 Compare | HL_2A64_006 | HL_2JLT_001, HL_3T4B_003 | HL_3DHS_005, HL_3IVK_006 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-R-R-R-R-R
- Heat map statistics
- Min 0.56 | Avg 0.51 | Max 0.89
Coloring options: