Motif HL_87030.3 Version HL_87030.3 of this group appears in releases 3.87 to 3.87
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_4KJI_001 | 4KJI | 0.5330 | 4 | C | RsmZ-2 | G | 5 | A | 6 | A | 10 | C | 12 | cWW | ncSW | |
2 | HL_1MFQ_001 | 1MFQ | 0.3619 | 2 | Other HL | A | SRP RNA | G | 146 | G | 147 | G | 150 | C | 151 | cWW | |
3 | HL_1JID_001 | 1JID | 0.3382 | 2 | Other HL | B | HELIX 6 OF HUMAN SRP RNA | G | 146 | G | 147 | G | 150 | C | 151 | cWW | |
4 | HL_1L9A_001 | 1L9A | 0.3633 | 2 | Other HL | B | signal recognition particle RNA S domain | G | 146 | G | 147 | G | 150 | C | 151 | cWW | ntSH |
5 | HL_3NDB_001 | 3NDB | 0.5398 | 2 | M | SRP RNA | U | 162 | G | 163 | G | 166 | G | 167 | cWW | ntSH | |
6 | HL_3KTW_001 | 3KTW | 0.4420 | 2 | C | SRP RNA | U | 163 | G | 164 | G | 167 | G | 168 | cWW | ntSH | |
7 | HL_4WF9_031 | 4WF9 | 0.3327 | 2 | X | LSU rRNA | C | 1260 | G | 1261 | A | 1264 | G | 1265 | cWW | ntSH | |
8 | HL_7A0S_031 | 7A0S | 0.4000 | 2 | X | LSU rRNA | C | 1235 | G | 1236 | A | 1239 | G | 1240 | cWW | ||
9 | HL_5J7L_164 | 5J7L | 0.2793 | 2 | Other HL | DA | LSU rRNA | U | 1222 | G | 1223 | A | 1226 | G | 1227 | cWW | ntSH |
10 | HL_6CZR_087 | 6CZR | 0.2349 | 2 | Other HL | 1a | SSU rRNA | C | 710 | G | 711 | G | 714 | G | 715 | cWW | ntSH |
11 | HL_1G1X_003 | 1G1X | 0.2454 | 2 | Other HL | E | 16S RIBOSOMAL RNA | C | 726 | G | 727 | G | 730 | G | 731 | cWW | ntSH |
12 | HL_6SVS_001 | 6SVS | 0.2284 | 2 | A | RNA (79-mer) | C | 26 | G | 27 | A | 30 | G | 31 | cWW | ntSH | |
13 | HL_1G1X_005 | 1G1X | 0.2295 | 2 | Other HL | J | 16S RIBOSOMAL RNA | C | 726 | G | 727 | G | 730 | G | 731 | cWW | ntSH |
14 | HL_4LFB_016 | 4LFB | 0.2278 | 2 | Other HL | A | SSU rRNA | C | 726 | G | 727 | G | 730 | G | 731 | cWW | ntSH |
15 | HL_5J7L_016 | 5J7L | 0.2220 | 2 | Other HL | AA | SSU rRNA | C | 726 | G | 727 | G | 730 | G | 731 | cWW | ntSH |
16 | HL_4V88_207 | 4V88 | 0.2189 | 2 | Other HL | A6 | SSU rRNA | C | 937 | G | 938 | A | 941 | G | 942 | cWW | ntSH |
17 | HL_8C3A_212 | 8C3A | 0.1871 | 2 | CM | SSU rRNA | C | 922 | G | 923 | A | 926 | G | 927 | cWW | ntSH | |
18 | HL_4OQU_004 | 4OQU | 0.1997 | 2 | Other HL | A | SAM-I/IV riboswitch | C | 76 | G | 77 | A | 80 | G | 81 | cWW | ntSH |
19 | HL_6M0X_001 | 6M0X | 0.1820 | 2 | B | RNA (71-MER) | C | 32 | G | 33 | A | 36 | G | 37 | cWW | ntSH | |
20 | HL_6CZR_090 | 6CZR | 0.2612 | 2 | GNRA | 1a | SSU rRNA | C | 840 | U | 841 | C | 844 | G | 845 | cWW | ntSH |
21 | HL_6UFG_005 | 6UFG | 0.2899 | 2 | Other HL | A | RNA (166-MER) | C | 144 | G | 145 | A | 148 | G | 149 | cWW | ntSH |
22 | HL_5U3G_001 | 5U3G | 0.1643 | 2 | B | Guanidine-I riboswitch | C | 18 | G | 19 | A | 22 | G | 23 | cWW | ntSH | |
23 | HL_4C7O_001 | 4C7O | 0.1585 | 2 | Other HL | E | SRP RNA | C | 19 | G | 20 | A | 23 | G | 24 | cWW | ntSH |
24 | HL_5J7L_190 | 5J7L | 0.0000 | 2 | Other HL | DA | LSU rRNA | U | 2356 | G | 2357 | G | 2360 | G | 2361 | cWW | ntSH |
25 | HL_8VTW_034 | 8VTW | 0.2825 | 2 | 1A | LSU rRNA | C | 1363 | G | 1364 | A | 1367 | G | 1368 | cWW | ntSH | |
26 | HL_5J7L_167 | 5J7L | 0.2941 | 2 | Other HL | DA | LSU rRNA | C | 1363 | G | 1364 | A | 1367 | G | 1368 | cWW | ntSH |
27 | HL_4WF9_034 | 4WF9 | 0.3792 | 2 | Other HL | X | LSU rRNA | C | 1400 | G | 1401 | A | 1404 | G | 1405 | cWW | ntSH |
28 | HL_5HR6_002 | 5HR6 | 0.2308 | 5 | C | tRNA | C | 31 | C | 32 | C | 36 | G | 39 | cWW | tSW | |
29 | HL_5HR7_005 | 5HR7 | 0.1767 | 5 | D | tRNA | C | 31 | C | 32 | C | 36 | G | 39 | cWW | tSW | |
30 | HL_3AM1_002 | 3AM1 | 0.3780 | 2 | Other HL | B | ASL-truncated tRNA | C | 32 | U | 33 | G | 36 | G | 37 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGAAAG | 8 |
CGAAGG | 5 |
GGGAGC | 3 |
CGGAAG | 2 |
CCUUUCACG | 2 |
GAAGGAUC | 1 |
UGUAGG | 1 |
UGGAGG | 1 |
CGUAAG | 1 |
UGUGAG | 1 |
CGAGAG | 1 |
CUAACG | 1 |
UGACGG | 1 |
CGACAG | 1 |
CUUCGG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAAA | 8 |
GAAG | 5 |
GGAG | 4 |
GGAA | 2 |
CUUUCAC | 2 |
AAGGAU | 1 |
GUAG | 1 |
GUAA | 1 |
GUGA | 1 |
GAGA | 1 |
UAAC | 1 |
GACG | 1 |
GACA | 1 |
UUCG | 1 |
Release history
Release | 3.87 |
---|---|
Date | 2024-08-14 |
Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Other HL (17)
- GNRA (1)
- Basepair signature
- cWW-F-F
- Heat map statistics
- Min 0.07 | Avg 0.31 | Max 0.66
Coloring options: