#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 41-42-3
1 HL_4KJI_0014KJI0.53304 CRsmZ-2G5A6A10C12cWWncSW
2 HL_1MFQ_0011MFQ0.36192Other HLA SRP RNAG146G147G150C151cWW
3 HL_1JID_0011JID0.33822Other HLBHELIX 6 OF HUMAN SRP RNAG146G147G150C151cWW
4 HL_1L9A_0011L9A0.36332Other HLBsignal recognition particle RNA S domainG146G147G150C151cWWntSH
5 HL_3NDB_0013NDB0.53982 M SRP RNAU162G163G166G167cWWntSH
6 HL_3KTW_0013KTW0.44202 C SRP RNAU163G164G167G168cWWntSH
7 HL_4WF9_0314WF90.33272 X LSU rRNAC1260G1261A1264G1265cWWntSH
8 HL_7A0S_0317A0S0.40002 X LSU rRNAC1235G1236A1239G1240cWW
9 HL_5J7L_1645J7L0.27932Other HLDA LSU rRNAU1222G1223A1226G1227cWWntSH
10 HL_6CZR_0876CZR0.23492Other HL1a SSU rRNAC710G711G714G715cWWntSH
11 HL_1G1X_0031G1X0.24542Other HLE16S RIBOSOMAL RNAC726G727G730G731cWWntSH
12 HL_6SVS_0016SVS0.22842 ARNA (79-mer)C26G27A30G31cWWntSH
13 HL_1G1X_0051G1X0.22952Other HLJ16S RIBOSOMAL RNAC726G727G730G731cWWntSH
14 HL_4LFB_0164LFB0.22782Other HLA SSU rRNAC726G727G730G731cWWntSH
15 HL_5J7L_0165J7L0.22202Other HLAA SSU rRNAC726G727G730G731cWWntSH
16 HL_4V88_2074V880.21892Other HLA6 SSU rRNAC937G938A941G942cWWntSH
17 HL_8C3A_2128C3A0.18712 CM SSU rRNAC922G923A926G927cWWntSH
18 HL_4OQU_0044OQU0.19972Other HLASAM-I/IV riboswitchC76G77A80G81cWWntSH
19 HL_6M0X_0016M0X0.18202 BRNA (71-MER)C32G33A36G37cWWntSH
20 HL_6CZR_0906CZR0.26122GNRA1a SSU rRNAC840U841C844G845cWWntSH
21 HL_6UFG_0056UFG0.28992Other HLARNA (166-MER)C144G145A148G149cWWntSH
22 HL_5U3G_0015U3G0.16432 BGuanidine-I riboswitchC18G19A22G23cWWntSH
23 HL_4C7O_0014C7O0.15852Other HLESRP RNAC19G20A23G24cWWntSH
24 HL_5J7L_1905J7L0.00002Other HLDA LSU rRNAU2356G2357G2360G2361cWWntSH
25 HL_8VTW_0348VTW0.28252 1A LSU rRNAC1363G1364A1367G1368cWWntSH
26 HL_5J7L_1675J7L0.29412Other HLDA LSU rRNAC1363G1364A1367G1368cWWntSH
27 HL_4WF9_0344WF90.37922Other HLX LSU rRNAC1400G1401A1404G1405cWWntSH
28 HL_5HR6_0025HR60.23085 C tRNAC31C32C36G39cWWtSW
29 HL_5HR7_0055HR70.17675 D tRNAC31C32C36G39cWWtSW
30 HL_3AM1_0023AM10.37802Other HLBASL-truncated tRNAC32U33G36G37cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAAG8
CGAAGG5
GGGAGC3
CGGAAG2
CCUUUCACG2
GAAGGAUC1
UGUAGG1
UGGAGG1
CGUAAG1
UGUGAG1
CGAGAG1
CUAACG1
UGACGG1
CGACAG1
CUUCGG1
Non-Watson-Crick part of the motif
SequenceCounts
GAAA8
GAAG5
GGAG4
GGAA2
CUUUCAC2
AAGGAU1
GUAG1
GUAA1
GUGA1
GAGA1
UAAC1
GACG1
GACA1
UUCG1

Release history

Release3.87
Date2024-08-14
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Other HL (17)
  • GNRA (1)
  • Basepair signature
    cWW-F-F
    Heat map statistics
    Min 0.07 | Avg 0.31 | Max 0.66
    Help

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