Motif HL_87844.1 Version HL_87844.1 of this group appears in releases 0.3 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3V2F_021 | 3V2F | 0.9201 | 1 | A | 23S Ribosomal RNA | C | 641 | G | 642 | A | 643 | A | 644 | A | 646 | G | 647 | cWW | ntSW |
| 2 | HL_3DIR_003 | 3DIR | 0.7351 | 1 | A | RNA (174-MER) | G | 124 | G | 125 | A | 126 | A | 127 | A | 129 | C | 130 | cWW | ntSH |
| 3 | HL_2QBG_022 | 2QBG | 0.7902 | 1 | B | 23S rRNA | U | 641 | U | 642 | A | 643 | A | 644 | U | 646 | G | 647 | cWW | |
| 4 | HL_2ZJR_006 | 2ZJR | 0.2383 | 2 | X | LSU rRNA | G | 171 | A | 172 | A | 174 | C | 175 | U | 177 | C | 178 | cWW | ntSH |
| 5 | HL_1S72_006 | 1S72 | 0.1333 | 2 | 0 | LSU rRNA | G | 164 | A | 165 | A | 167 | C | 168 | U | 170 | C | 171 | cWW | tSH |
| 6 | HL_3V2F_006 | 3V2F | 0.0789 | 2 | A | 23S Ribosomal RNA | G | 194 | A | 195 | A | 197 | C | 198 | U | 200 | C | 201 | cWW | ntSH |
| 7 | HL_2QBG_008 | 2QBG | 0.0000 | 2 | B | 23S rRNA | G | 194 | A | 195 | A | 197 | C | 198 | U | 200 | C | 201 | cWW | ntSH |
| 8 | HL_3U5H_001 | 3U5H | 0.1715 | 2 | 5 | 25S rRNA | U | 38 | A | 39 | G | 41 | C | 42 | U | 44 | A | 45 | cWW | tSH |
| 9 | HL_4A1B_001 | 4A1B | 0.2483 | 2 | 1 | 26S RRNA | U | 36 | A | 37 | G | 39 | C | 40 | U | 42 | A | 43 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAACAUC | 4 |
| UAAGCAUA | 2 |
| CGAACAG | 1 |
| GGAAUAC | 1 |
| UUAACUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAACAU | 4 |
| AAGCAU | 2 |
| GAACA | 1 |
| GAAUA | 1 |
| UAACU | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_87844.1 | Only in the parent motif |
|---|---|---|---|
| HL_41237.2 Compare | HL_1S72_006, HL_2ZJR_006, HL_2QBG_008 | HL_3V2F_006, HL_4A1B_001, HL_2QBG_022, HL_3DIR_003, HL_3V2F_021, HL_3U5H_001 | HL_3O58_001, HL_3PYO_006, HL_2QBG_009 |
| HL_04630.1 Compare | HL_3DIR_003 | HL_3V2F_006, HL_4A1B_001, HL_2QBG_022, HL_2QBG_008, HL_3V2F_021, HL_1S72_006, HL_3U5H_001, HL_2ZJR_006 | |
| HL_07320.2 Compare | HL_2QBG_022 | HL_3V2F_006, HL_4A1B_001, HL_3DIR_003, HL_2QBG_008, HL_3V2F_021, HL_1S72_006, HL_3U5H_001, HL_2ZJR_006 | HL_3O58_042, HL_3PYO_038, HL_3O58_011, HL_3O30_008, HL_1S72_016, HL_3PYO_021 |
Children motifs
| Child motif | Common motif instances | Only in HL_87844.1 | Only in the child motif |
|---|---|---|---|
| HL_87844.2 Compare | HL_4A1B_001, HL_3V2F_006, HL_2QBG_022, HL_3DIR_003, HL_2QBG_008, HL_3V2F_021, HL_1S72_006, HL_3U5H_001 | HL_2ZJR_006 | HL_4IOA_006 |
- Annotations
-
- (9)
- Basepair signature
- cWW-tSH-R-R
- Heat map statistics
- Min 0.08 | Avg 0.48 | Max 0.96
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