Motif HL_89131.1 Version HL_89131.1 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-7 | 10-11 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VX2_036 | 1VX2 | 0.9353 | 0 | 5 | A/P tRNA | G | 52 | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 59 | U | 60 | C | 61 | C | 62 | cWW | ncWS | tWH | ncSH |
| 2 | HL_3J7A_031 | 3J7A | 0.1539 | 1 | A | SSU rRNA | A | 1847 | U | 1848 | U | 1849 | G | 1850 | C | 1851 | A | 1852 | A | 1853 | U | 1854 | U | 1855 | U | 1857 | U | 1858 | cWW | ncWH | tWH | |
| 3 | HL_3U5F_034 | 3U5F | 0.0000 | 1 | 6 | 18S rRNA | A | 1550 | U | 1551 | U | 1552 | G | 1553 | U | 1554 | A | 1555 | A | 1556 | U | 1557 | U | 1558 | U | 1560 | U | 1561 | cWW | ncWH | tWH | |
| 4 | HL_4BPP_033 | 4BPP | 0.3309 | 1 | A | 18S RRNA | U | 1522 | U | 1523 | U | 1524 | G | 1525 | G | 1526 | A | 1527 | A | 1528 | U | 1529 | U | 1530 | U | 1532 | G | 1533 | cWW | ncWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUCGAUUCC | 1 |
| AUUGCAAUUAUU | 1 |
| AUUGUAAUUAUU | 1 |
| UUUGGAAUUGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUCGAUUC | 1 |
| UUGCAAUUAU | 1 |
| UUGUAAUUAU | 1 |
| UUGGAAUUGU | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_89131.1 | Only in the parent motif |
|---|---|---|---|
| HL_91872.1 Compare | HL_3U5F_034, HL_4BPP_033 | HL_1VX2_036, HL_3J7A_031 |
Children motifs
| Child motif | Common motif instances | Only in HL_89131.1 | Only in the child motif |
|---|---|---|---|
| HL_89131.2 Compare | HL_3U5F_034, HL_3J7A_031, HL_4BPP_033 | HL_1VX2_036 | HL_4W23_031 |
- Annotations
-
- (4)
- Basepair signature
- cWW-cWH-R-R-tWH-R-R-R
- Heat map statistics
- Min 0.15 | Avg 0.46 | Max 0.97
Coloring options: