Motif HL_89346.1 Version HL_89346.1 of this group appears in releases 3.91 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 3-14 | 4-13 | 5-12 | 5-14 | 6-11 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8P9A_224 | 8P9A | 0.0000 | 3 | sR | SSU rRNA | A | 1691 | G | 1692 | A | 1693 | A | 1694 | G | 1695 | G | 1696 | G | 1697 | G | 1698 | G | 1699 | C | 1703 | U | 1704 | C | 1705 | C | 1706 | A | 1707 | U | 1708 | C | 1709 | U | 1710 | cWW | ncSW | ||||
| 2 | HL_6ZDU_005 | 6ZDU | 0.8499 | 2 | C | Chains: C,D | C | 1268 | U | 1269 | U | 1270 | C | 1271 | C | 1272 | C | 1273 | G | 1274 | A | 1275 | A | 1276 | U | 1278 | G | 1279 | G | 1281 | G | 1282 | A | 1283 | U | 1284 | A | 1285 | G | 1286 | cWW | ncWW | ncWW | ncWW | ncWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGAAGGGGGCAACUCCAUCU | 1 |
| CUUCCCGAAUUGUGGAUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGGGGGCAACUCCAUC | 1 |
| UUCCCGAAUUGUGGAUA | 1 |
Release history
| Release | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|
| Date | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.85 | Avg 0.42 | Max 0.85
Coloring options: