Motif HL_89567.1 Version HL_89567.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1S03_001 | 1S03 | 0.5326 | 2 | A | 47-MER | A | 22 | G | 23 | G | 24 | A | 26 | A | 27 | U | 29 | cWW |
| 2 | HL_4V9F_042 | 4V9F | 0.1091 | 2 | 0 | LSU rRNA | C | 1687 | G | 1688 | A | 1689 | C | 1690 | C | 1692 | G | 1694 | cWW |
| 3 | HL_9DFE_038 | 9DFE | 0.0000 | 2 | 1A | LSU rRNA | C | 1612 | G | 1613 | A | 1614 | C | 1615 | C | 1617 | G | 1619 | cWW |
| 4 | HL_4WF9_038 | 4WF9 | 0.1157 | 2 | X | LSU rRNA | C | 1656 | G | 1657 | A | 1658 | C | 1659 | C | 1661 | G | 1663 | cWW |
| 5 | HL_5J7L_173 | 5J7L | 0.1104 | 2 | DA | LSU rRNA | C | 1612 | G | 1613 | A | 1614 | C | 1615 | C | 1617 | G | 1619 | cWW |
| 6 | HL_7A0S_040 | 7A0S | 0.1360 | 2 | X | LSU rRNA | C | 1628 | G | 1629 | A | 1630 | C | 1631 | C | 1633 | G | 1635 | cWW |
| 7 | HL_8P9A_152 | 8P9A | 0.3497 | 2 | AR | LSU rRNA | C | 1844 | G | 1845 | C | 1846 | A | 1847 | C | 1849 | G | 1851 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGACACAG | 4 |
| AGGCAAUU | 1 |
| CGACACG | 1 |
| CGCAGCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACACA | 4 |
| GGCAAU | 1 |
| GACAC(6MZ) | 1 |
| GCAGCA | 1 |
- Annotations
-
- (7)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.11 | Avg 0.26 | Max 0.70
Coloring options: