Motif HL_90642.5 Version HL_90642.5 of this group appears in releases 3.54 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_049 | 7A0S | 0.1042 | 3 | X | LSU rRNA | G | 2010 | U | 2011 | A | 2012 | A | 2016 | U | 2017 | G | 2018 | C | 2019 | cWW | tWH |
| 2 | HL_7RQB_050 | 7RQB | 0.0000 | 3 | 1A | LSU rRNA | G | 2027 | U | 2028 | G | 2029 | A | 2033 | U | 2034 | G | 2035 | C | 2036 | cWW | tWH |
| 3 | HL_4WF9_047 | 4WF9 | 0.1673 | 3 | X | LSU rRNA | G | 2054 | U | 2055 | G | 2056 | A | 2060 | U | 2061 | G | 2062 | C | 2063 | cWW | tWH |
| 4 | HL_4V9F_052 | 4V9F | 0.1650 | 3 | 0 | LSU rRNA | G | 2068 | U | 2069 | G | 2070 | A | 2074 | G | 2075 | U | 2076 | C | 2077 | cWW | tWH |
| 5 | HL_5TBW_051 | 5TBW | 0.3519 | 3 | 1 | LSU rRNA | G | 2369 | G | 2370 | G | 2371 | G | 2375 | G | 2376 | G | 2377 | C | 2378 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGAAGAUGC | 2 |
| GUAAAGAUGC | 1 |
| GUGCGGAGUC | 1 |
| GGGAACGGGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAAGAUG | 2 |
| UAAAGAUG | 1 |
| UGCGGAGU | 1 |
| GGAACGGG | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-03 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-R-R-tWH-R
- Heat map statistics
- Min 0.10 | Avg 0.19 | Max 0.38
Coloring options: