RNA 3D Hub //

Motif HL_91104.2 Version HL_91104.2 of this group appears in releases 3.87 to 3.87

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 31-3
1 HL_5TBW_0395TBW0.84453GNRA related1 LSU rRNAA1760C1761U1765
2 HL_4V88_1984V880.49813A6 SSU rRNAC491A492G496cWW
3 HL_7A0S_0297A0S0.62935X LSU rRNAC1103G1104G1110cWW
4 HL_4YAZ_0044YAZ0.59982Mini UNCGRCyclic di-GMP-I riboswitchC56C58G60cWW
5 HL_4LFB_0054LFB0.47712Mini UNCGA SSU rRNAC201U203G216cWW
6 HL_8C3A_0638C3A0.166551 LSU rRNAA2869C2871U2876cWW
7 HL_5TBW_0625TBW0.149351 LSU rRNAA2897C2899U2904cWW
8 HL_7A0S_0607A0S0.13435X LSU rRNAU2507A2509G2514cWW
9 HL_4V9F_0634V9F0.147950 LSU rRNAU2563C2565G2570cWW
10 HL_8VTW_0608VTW0.000051A LSU rRNAU2528A2530G2535cWW
11 HL_5J7L_1945J7L0.14195DA LSU rRNAU2528A2530G2535cWW
12 HL_4WF9_0574WF90.16625X LSU rRNAU2555U2557G2562cWW

3D structures

Complete motif including flanking bases
SequenceCounts
AGCAGAAU2
UGAAGAAG2
ACCUUU1
CAUUCG1
CGUAAUAG1
CCCUG1
CUUUG1
UGCAGAAG1
UGAAGUAG1
UGUAGUCG1
Non-Watson-Crick part of the motif
SequenceCounts
GCAGAA3
GAAGAA2
CCUU1
AUUC1
GUAAUA1
CCU1
UUU1
GAAGUA1
GUAGUC1

Release history

Release3.87
Date2024-08-14
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (9)
  • Mini UNCG (2)
  • GNRA related (1)
    • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.09 | Avg 0.42 | Max 0.88
    Help

    Coloring options:

    HL_5TBW_039:HL_5TBW_039 = 0HL_5TBW_039:HL_4V88_198 = 0.478HL_5TBW_039:HL_7A0S_029 = 0.8836HL_5TBW_039:HL_4YAZ_004 = 0.417HL_5TBW_039:HL_4LFB_005 = 0.5051HL_5TBW_039:HL_8C3A_063 = 0.8621HL_5TBW_039:HL_5TBW_062 = 0.8514HL_5TBW_039:HL_7A0S_060 = 0.8125HL_5TBW_039:HL_4V9F_063 = 0.8364HL_5TBW_039:HL_8VTW_060 = 0.8445HL_5TBW_039:HL_5J7L_194 = 0.8765HL_5TBW_039:HL_4WF9_057 = 0.8731HL_4V88_198:HL_5TBW_039 = 0.478HL_4V88_198:HL_4V88_198 = 0HL_4V88_198:HL_7A0S_029 = 0.2771HL_4V88_198:HL_4YAZ_004 = 0.3621HL_4V88_198:HL_4LFB_005 = 0.3397HL_4V88_198:HL_8C3A_063 = 0.847HL_4V88_198:HL_5TBW_062 = 0.8282HL_4V88_198:HL_7A0S_060 = 0.5248HL_4V88_198:HL_4V9F_063 = 0.6394HL_4V88_198:HL_8VTW_060 = 0.4981HL_4V88_198:HL_5J7L_194 = 0.4306HL_4V88_198:HL_4WF9_057 = 0.5052HL_7A0S_029:HL_5TBW_039 = 0.8836HL_7A0S_029:HL_4V88_198 = 0.2771HL_7A0S_029:HL_7A0S_029 = 0HL_7A0S_029:HL_4YAZ_004 = 0.3018HL_7A0S_029:HL_4LFB_005 = 0.3254HL_7A0S_029:HL_8C3A_063 = 0.6975HL_7A0S_029:HL_5TBW_062 = 0.7522HL_7A0S_029:HL_7A0S_060 = 0.6691HL_7A0S_029:HL_4V9F_063 = 0.6938HL_7A0S_029:HL_8VTW_060 = 0.6293HL_7A0S_029:HL_5J7L_194 = 0.6482HL_7A0S_029:HL_4WF9_057 = 0.669HL_4YAZ_004:HL_5TBW_039 = 0.417HL_4YAZ_004:HL_4V88_198 = 0.3621HL_4YAZ_004:HL_7A0S_029 = 0.3018HL_4YAZ_004:HL_4YAZ_004 = 0HL_4YAZ_004:HL_4LFB_005 = 0.2218HL_4YAZ_004:HL_8C3A_063 = 0.4976HL_4YAZ_004:HL_5TBW_062 = 0.571HL_4YAZ_004:HL_7A0S_060 = 0.6341HL_4YAZ_004:HL_4V9F_063 = 0.7921HL_4YAZ_004:HL_8VTW_060 = 0.5998HL_4YAZ_004:HL_5J7L_194 = 0.5127HL_4YAZ_004:HL_4WF9_057 = 0.611HL_4LFB_005:HL_5TBW_039 = 0.5051HL_4LFB_005:HL_4V88_198 = 0.3397HL_4LFB_005:HL_7A0S_029 = 0.3254HL_4LFB_005:HL_4YAZ_004 = 0.2218HL_4LFB_005:HL_4LFB_005 = 0HL_4LFB_005:HL_8C3A_063 = 0.3856HL_4LFB_005:HL_5TBW_062 = 0.4545HL_4LFB_005:HL_7A0S_060 = 0.5193HL_4LFB_005:HL_4V9F_063 = 0.6706HL_4LFB_005:HL_8VTW_060 = 0.4771HL_4LFB_005:HL_5J7L_194 = 0.4018HL_4LFB_005:HL_4WF9_057 = 0.5042HL_8C3A_063:HL_5TBW_039 = 0.8621HL_8C3A_063:HL_4V88_198 = 0.847HL_8C3A_063:HL_7A0S_029 = 0.6975HL_8C3A_063:HL_4YAZ_004 = 0.4976HL_8C3A_063:HL_4LFB_005 = 0.3856HL_8C3A_063:HL_8C3A_063 = 0HL_8C3A_063:HL_5TBW_062 = 0.0866HL_8C3A_063:HL_7A0S_060 = 0.1934HL_8C3A_063:HL_4V9F_063 = 0.256HL_8C3A_063:HL_8VTW_060 = 0.1665HL_8C3A_063:HL_5J7L_194 = 0.2075HL_8C3A_063:HL_4WF9_057 = 0.2361HL_5TBW_062:HL_5TBW_039 = 0.8514HL_5TBW_062:HL_4V88_198 = 0.8282HL_5TBW_062:HL_7A0S_029 = 0.7522HL_5TBW_062:HL_4YAZ_004 = 0.571HL_5TBW_062:HL_4LFB_005 = 0.4545HL_5TBW_062:HL_8C3A_063 = 0.0866HL_5TBW_062:HL_5TBW_062 = 0HL_5TBW_062:HL_7A0S_060 = 0.1687HL_5TBW_062:HL_4V9F_063 = 0.218HL_5TBW_062:HL_8VTW_060 = 0.1493HL_5TBW_062:HL_5J7L_194 = 0.2102HL_5TBW_062:HL_4WF9_057 = 0.2254HL_7A0S_060:HL_5TBW_039 = 0.8125HL_7A0S_060:HL_4V88_198 = 0.5248HL_7A0S_060:HL_7A0S_029 = 0.6691HL_7A0S_060:HL_4YAZ_004 = 0.6341HL_7A0S_060:HL_4LFB_005 = 0.5193HL_7A0S_060:HL_8C3A_063 = 0.1934HL_7A0S_060:HL_5TBW_062 = 0.1687HL_7A0S_060:HL_7A0S_060 = 0HL_7A0S_060:HL_4V9F_063 = 0.1327HL_7A0S_060:HL_8VTW_060 = 0.1343HL_7A0S_060:HL_5J7L_194 = 0.1747HL_7A0S_060:HL_4WF9_057 = 0.1629HL_4V9F_063:HL_5TBW_039 = 0.8364HL_4V9F_063:HL_4V88_198 = 0.6394HL_4V9F_063:HL_7A0S_029 = 0.6938HL_4V9F_063:HL_4YAZ_004 = 0.7921HL_4V9F_063:HL_4LFB_005 = 0.6706HL_4V9F_063:HL_8C3A_063 = 0.256HL_4V9F_063:HL_5TBW_062 = 0.218HL_4V9F_063:HL_7A0S_060 = 0.1327HL_4V9F_063:HL_4V9F_063 = 0HL_4V9F_063:HL_8VTW_060 = 0.1479HL_4V9F_063:HL_5J7L_194 = 0.2142HL_4V9F_063:HL_4WF9_057 = 0.1918HL_8VTW_060:HL_5TBW_039 = 0.8445HL_8VTW_060:HL_4V88_198 = 0.4981HL_8VTW_060:HL_7A0S_029 = 0.6293HL_8VTW_060:HL_4YAZ_004 = 0.5998HL_8VTW_060:HL_4LFB_005 = 0.4771HL_8VTW_060:HL_8C3A_063 = 0.1665HL_8VTW_060:HL_5TBW_062 = 0.1493HL_8VTW_060:HL_7A0S_060 = 0.1343HL_8VTW_060:HL_4V9F_063 = 0.1479HL_8VTW_060:HL_8VTW_060 = 0HL_8VTW_060:HL_5J7L_194 = 0.1419HL_8VTW_060:HL_4WF9_057 = 0.1662HL_5J7L_194:HL_5TBW_039 = 0.8765HL_5J7L_194:HL_4V88_198 = 0.4306HL_5J7L_194:HL_7A0S_029 = 0.6482HL_5J7L_194:HL_4YAZ_004 = 0.5127HL_5J7L_194:HL_4LFB_005 = 0.4018HL_5J7L_194:HL_8C3A_063 = 0.2075HL_5J7L_194:HL_5TBW_062 = 0.2102HL_5J7L_194:HL_7A0S_060 = 0.1747HL_5J7L_194:HL_4V9F_063 = 0.2142HL_5J7L_194:HL_8VTW_060 = 0.1419HL_5J7L_194:HL_5J7L_194 = 0HL_5J7L_194:HL_4WF9_057 = 0.13HL_4WF9_057:HL_5TBW_039 = 0.8731HL_4WF9_057:HL_4V88_198 = 0.5052HL_4WF9_057:HL_7A0S_029 = 0.669HL_4WF9_057:HL_4YAZ_004 = 0.611HL_4WF9_057:HL_4LFB_005 = 0.5042HL_4WF9_057:HL_8C3A_063 = 0.2361HL_4WF9_057:HL_5TBW_062 = 0.2254HL_4WF9_057:HL_7A0S_060 = 0.1629HL_4WF9_057:HL_4V9F_063 = 0.1918HL_4WF9_057:HL_8VTW_060 = 0.1662HL_4WF9_057:HL_5J7L_194 = 0.13HL_4WF9_057:HL_4WF9_057 = 0HL_5TBW_039HL_4V88_198HL_7A0S_029HL_4YAZ_004HL_4LFB_005HL_8C3A_063HL_5TBW_062HL_7A0S_060HL_4V9F_063HL_8VTW_060HL_5J7L_194HL_4WF9_057Discrepancy0.000.200.400.600.80
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