Motif HL_93374.1 Version HL_93374.1 of this group appears in releases 3.77 to 3.79

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4	1-4	2-3
1	HL_4V88_190	4V88	0.3841	2	A6	SSU rRNA	C	230	U	231	G	234	G	235	ncWW
2	HL_8S95_003	8S95	0.2046	3	C	Enterovirus 5' cloverleaf cis-acting replication element	C	67	C	68	G	71	G	73	cWW	ncWH
3	HL_6VMY_004	6VMY	0.0000	3	A	Cobalamin riboswitch	C	287	C	288	G	291	G	293	cWW	ncWH
4	HL_5WTI_001	5WTI	0.3593	3	B	RNA (123-MER)	C	12	U	13	U	16	G	18	cWW	cWH
5	HL_2Y9H_005	2Y9H	0.5132	4	J	RNA (19-mer)	A	10	C	11	G	16	U	17	cWW	ncWH
6	HL_3SKL_006	3SKL	0.8369	4	B	RNA (66-MER)	A	65	A	66	U	71	U	72	cWW	ncWW
7	HL_5X6B_001	5X6B	0.7360	7	P	tRNA	C	12	U	13	A	21	G	22	cWW	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUCGG	1
CCACGUG	1
CCAAGCG	1
CUUUUGG	1
ACGCGUGU	1
AACCUAUU	1
CUAGGGGCUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCG	1
CACGU	1
CAAGC	1
UUUUG	1
CGCGUG	1
ACCUAU	1
UAGGGGCUA	1

Release history

Release	3.77	3.78	3.79
Date	2023-12-06	2024-01-03	2024-01-03
Status	New id, > 2 parents	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (7)
Basepair signature: cWW-cWH
Heat map statistics: Min 0.20 | Avg 0.48 | Max 0.91

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