Motif HL_93374.1 Version HL_93374.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_190 | 4V88 | 0.3841 | 2 | UNCG variation (H) | A6 | SSU rRNA | C | 230 | U | 231 | G | 234 | G | 235 | ncWW | |
| 2 | HL_8S95_003 | 8S95 | 0.2046 | 3 | UNCG variation | C | Enterovirus 5' cloverleaf cis-acting replication element | C | 67 | C | 68 | G | 71 | G | 73 | cWW | ncWH |
| 3 | HL_6VMY_004 | 6VMY | 0.0000 | 3 | UNCG variation | A | Cobalamin riboswitch | C | 287 | C | 288 | G | 291 | G | 293 | cWW | ncWH |
| 4 | HL_5WTI_001 | 5WTI | 0.3593 | 3 | B | RNA (123-MER) | C | 12 | U | 13 | U | 16 | G | 18 | cWW | cWH | |
| 5 | HL_2Y9H_005 | 2Y9H | 0.5132 | 4 | J | RNA (19-mer) | A | 10 | C | 11 | G | 16 | U | 17 | cWW | ncWH | |
| 6 | HL_3SKL_006 | 3SKL | 0.8369 | 4 | B | 2dG-I riboswitch aptamer | A | 65 | A | 66 | U | 71 | U | 72 | cWW | ncWW | |
| 7 | HL_5X6B_001 | 5X6B | 0.7360 | 7 | P | tRNA | C | 12 | U | 13 | A | 21 | G | 22 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUCGG | 1 |
| CCACGUG | 1 |
| CCAAGCG | 1 |
| CUUUUGG | 1 |
| ACGCGUGU | 1 |
| AACCUAUU | 1 |
| CUAGGGGCUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCG | 1 |
| CACGU | 1 |
| CAAGC | 1 |
| UUUUG | 1 |
| CGCGUG | 1 |
| ACCUAU | 1 |
| UAGGGGCUA | 1 |
- Annotations
-
- (4)
- UNCG variation (2)
- UNCG variation (H) (1)
- Basepair signature
- cWW-cWH
- Heat map statistics
- Min 0.20 | Avg 0.48 | Max 0.91
Coloring options: