Motif HL_97041.1 Version HL_97041.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_053 | 4WF9 | 0.8952 | 4 | GNRA with extra cWW | X | LSU rRNA | C | 2382 | C | 2383 | U | 2384 | G | 2389 | cWW |
| 2 | HL_7RQB_057 | 7RQB | 0.9080 | 4 | GNRA with extra cWW (H) | 1A | LSU rRNA | C | 2355 | C | 2356 | U | 2357 | G | 2362 | cWW |
| 3 | HL_6DTD_001 | 6DTD | 0.3454 | 3 | C | RNA (37-MER) | C | 16 | U | 17 | U | 20 | G | 22 | cWW | |
| 4 | HL_6D12_001 | 6D12 | 0.1701 | 3 | C | human 7SK RNA stem-loop 4 | C | 309 | A | 310 | U | 311 | G | 315 | cWW | |
| 5 | HL_2OEU_002 | 2OEU | 0.0000 | 4 | A | Hammerhead Ribozyme | C | 25 | C | 26 | A | 27 | G | 32 | cWW | |
| 6 | HL_6D12_002 | 6D12 | 0.1518 | 3 | C | human 7SK RNA stem-loop 4 | C | 328 | A | 329 | U | 330 | G | 334 | cWW | |
| 7 | HL_5UD5_001 | 5UD5 | 0.2514 | 3 | C | tRNA | C | 13 | A | 14 | U | 15 | G | 21 | cWW | |
| 8 | HL_3D2V_002 | 3D2V | 0.8345 | 4 | T-loop related | A | TPP riboswitch (THI element) | G | 54 | G | 55 | U | 56 | C | 61 | cWW |
| 9 | HL_7TZS_002 | 7TZS | 0.8665 | 4 | T-loop related | X | TPP riboswitch (THI element) | G | 66 | A | 67 | U | 68 | C | 73 | cWW |
| 10 | HL_3K0J_002 | 3K0J | 0.8653 | 4 | T-loop related | E | RNA (87-MER) | G | 66 | A | 67 | U | 68 | C | 73 | cWW |
| 11 | HL_2ZZN_004 | 2ZZN | 0.2485 | 5 | D | RNA (71-MER) | U | 13 | A | 14 | G | 15 | A | 22 | cWW | |
| 12 | HL_6UFM_001 | 6UFM | 0.9211 | 7 | A | tRNA | C | 13 | A | 14 | G | 15 | G | 23 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUGUGG | 2 |
| GAUAAUGC | 2 |
| CCUACAAG | 1 |
| CCUGCAAG | 1 |
| CUUUUUG | 1 |
| CCAAAUAG | 1 |
| CAUGUAG | 1 |
| GGUAAUGC | 1 |
| UAGGGGCUA | 1 |
| CAGGCGGUUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGUG | 2 |
| AUAAUG | 2 |
| CUACAA | 1 |
| CUGCAA | 1 |
| UUUUU | 1 |
| CAAAUA | 1 |
| AUGUA | 1 |
| GUAAUG | 1 |
| AGGGGCU | 1 |
| AGGCGGUUA | 1 |
- Annotations
-
- (7)
- T-loop related (3)
- GNRA with extra cWW (1)
- GNRA with extra cWW (H) (1)
- Basepair signature
- cWW-F-F
- Heat map statistics
- Min 0.11 | Avg 0.39 | Max 0.92
Coloring options: