#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 5 6 71-72-6
1 HL_1VX6_0051VX60.46841A28S ribosomal RNAC202A203G204G205A206A207G209cWWntsS
2 HL_4QCN_0094QCN0.24431A23S Ribosomal RNAU329U330G331G332G333A334G336cWWtWH
3 HL_4IOA_0094IOA0.18691T-loop with 1 bulged baseX LSU rRNAC316U317G318G319A320A321G323cWWtWH
4 HL_2QBG_0112QBG0.12301B23S rRNAC305U306G307G308A309A310G312cWWtWH
5 HL_4CUV_0054CUV0.12021125S RRNAU194U195G196G197A198A199A201cWWtWH
6 HL_1S72_0101S720.00001T-loop with 2 stacked bulged bases (H)0 LSU rRNAU312U313G314G315A316A317A319cWWtWH
7 HL_3U5H_0053U5H0.07001525S rRNAU194U195G196G197A198A199A201cWWtWH
8 HL_4A1B_0054A1B0.15161126S RRNAU194U195G196G197A198A199A201cWWtWH
9 HL_3DHS_0023DHS0.21631ARNase P RNAC69U70G71A72G73A74G76cWWtWH
10 HL_2A64_0022A640.32021T-loop with 2 stacked bulged basesAribonuclease P RNAC69U70G71A72G73A74G76cWWtWH
11 HL_2HOJ_0022HOJ0.52521Athi-box riboswitchG66A67U68A69A70U71C73cWW
12 HL_2GDI_0022GDI0.52761Other HLXTPP riboswitchG66A67U68A69A70U71C73cWW
13 HL_2GDI_0042GDI0.49631YTPP riboswitchG66A67U68A69A70U71C73cWW
14 HL_4CUX_0064CUX0.40731218S RRNAG243A244U245G246A247U248C250cWW
15 HL_3U5F_0063U5F0.36081618S rRNAG243A244U245G246A247U248C250cWW
16 HL_3J7A_0043J7A0.32061A SSU rRNAA245A246G247G248A249A250U252cWW
17 HL_4BPP_0064BPP0.48581A18S RRNAG240A241U242G243A244A245C247cWW
18 HL_1S72_0391S720.56280Other HL (H)0 LSU rRNAC1594G1595U1596A1597A1598U1599G1600cWW
19 HL_4A1B_0374A1B0.59040126S RRNAG1743A1744U1745U1746A1747U1748C1749cWW
20 HL_1VX6_0371VX60.59250A28S ribosomal RNAA1876U1877U1878U1879A1880C1881U1882cWWntSHa
21 HL_1VWW_0391VWW0.7375-1528S ribosomal RNAG2664U2665U2666C2667G2668C2669C2670cWW

3D structures

Complete motif including flanking bases
SequenceCounts
UUGGAACA4
GAUAAUGC3
CUGGAAAG2
CUGAGAUG2
GAUGAUUC2
CAGGAAUG1
UUGGGAAG1
AAGGAAUU1
GAUGAAUC1
CGUAAUG1
GAUUAUC1
AUUUACU1
CUUCGG1
Non-Watson-Crick part of the motif
SequenceCounts
UGGAAC4
AUAAUG3
AGGAAU2
UGGAAA2
UGAGAU2
AUGAUU2
UGGGAA1
AUGAAU1
GUAAU1
AUUAU1
UUUAC1
UUCG1
Annotations
  • (16)
  • T-loop with 2 stacked bulged bases (H) (1)
  • Other HL (H) (1)
  • T-loop with 2 stacked bulged bases (1)
  • Other HL (1)
  • T-loop with 1 bulged base (1)
  • Basepair signature
    cWW-tWH-R-R-R
    Heat map statistics
    Min 0.07 | Avg 0.46 | Max 0.92
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