Motif HL_97917.2 Version HL_97917.2 of this group appears in releases 3.91 to 3.98

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6	1-6	2-5
1	HL_8P9A_212	8P9A	0.7804	4	sR	SSU rRNA	U	1055	U	1056	A	1061	A	1062	U	1063	G	1064	cWW	ncwW
2	HL_3OIN_001	3OIN	0.0000	2	C	RNA (14-mer)	C	4	U	5	A	8	A	9	C	10	G	11	cWW
3	HL_4PQV_003	4PQV	0.6411	1	A	Flavivirus 3' UTR stem loop IV	G	57	G	58	G	60	G	61	A	62	C	63	cWW	tSH

3D structures

Complete motif including flanking bases

Sequence	Counts
UUUUUUAAUG	1
CUUCAACG	1
GGAGGAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUUUUAAU	1
UUCAAC	1
GAGGA	1

Release history

Release	3.91	3.92	3.93	3.94	3.95	3.96	3.97	3.98
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26	2025-03-26	2025-04-23	2025-05-21	2025-06-18
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Basepair signature: cWW-F-F-F-F
Heat map statistics: Min 0.64 | Avg 0.50 | Max 0.82

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