Motif HL_99538.1 Version HL_99538.1 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_035 | 7A0S | 0.4318 | 2 | X | LSU rRNA | G | 1402 | U | 1403 | C | 1404 | A | 1405 | A | 1406 | G | 1407 | A | 1408 | C | 1411 | cWW | ntWH |
| 2 | HL_8C3A_035 | 8C3A | 0.1225 | 2 | 1 | LSU rRNA | G | 1595 | U | 1596 | U | 1597 | A | 1598 | A | 1599 | A | 1600 | A | 1601 | C | 1604 | cWW | tWH |
| 3 | HL_5TBW_035 | 5TBW | 0.1471 | 2 | 1 | LSU rRNA | G | 1599 | U | 1600 | U | 1601 | A | 1602 | A | 1603 | G | 1604 | A | 1605 | C | 1608 | cWW | tWH |
| 4 | HL_4WF9_035 | 4WF9 | 0.1465 | 2 | X | LSU rRNA | G | 1426 | U | 1427 | U | 1428 | G | 1429 | A | 1430 | U | 1431 | A | 1432 | C | 1435 | cWW | tWH |
| 5 | HL_4V9F_037 | 4V9F | 0.0918 | 2 | 0 | LSU rRNA | G | 1498 | U | 1499 | U | 1500 | A | 1501 | A | 1502 | U | 1503 | A | 1504 | C | 1507 | cWW | tWH |
| 6 | HL_5J7L_168 | 5J7L | 0.0000 | 2 | DA | LSU rRNA | G | 1389 | U | 1390 | U | 1391 | A | 1392 | A | 1393 | U | 1394 | A | 1395 | C | 1398 | cWW | tWH |
| 7 | HL_8VTW_035 | 8VTW | 0.0882 | 2 | 1A | LSU rRNA | G | 1389 | U | 1390 | U | 1391 | A | 1392 | A | 1393 | U | 1394 | A | 1395 | C | 1398 | cWW | tWH |
| 8 | HL_5TBW_050 | 5TBW | 0.6408 | 1 | 1 | LSU rRNA | U | 2292 | C | 2293 | U | 2294 | A | 2295 | A | 2296 | U | 2297 | A | 2299 | G | 2300 | cWW | |
| 9 | HL_8C3A_050 | 8C3A | 0.6527 | 1 | 1 | LSU rRNA | U | 2270 | C | 2271 | U | 2272 | A | 2273 | A | 2274 | U | 2275 | A | 2277 | G | 2278 | cWW | ncWW |
| 10 | HL_7A0S_048 | 7A0S | 0.7292 | 1 | X | LSU rRNA | G | 1932 | G | 1933 | U | 1934 | A | 1935 | A | 1936 | G | 1937 | U | 1939 | C | 1940 | cWW | ncWB |
| 11 | HL_8VTW_048 | 8VTW | 0.7321 | 1 | 1A | LSU rRNA | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | ncWB |
| 12 | HL_5J7L_182 | 5J7L | 0.7402 | 1 | DA | LSU rRNA | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | ncWB |
| 13 | HL_4WF9_046 | 4WF9 | 0.7237 | 1 | X | LSU rRNA | G | 1976 | G | 1977 | U | 1978 | A | 1979 | A | 1980 | G | 1981 | U | 1983 | C | 1984 | cWW | ncWB |
| 14 | HL_4V9F_051 | 4V9F | 0.6875 | 1 | 0 | LSU rRNA | C | 1990 | A | 1991 | U | 1992 | C | 1993 | A | 1994 | G | 1995 | A | 1997 | G | 1998 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAAGUUC | 4 |
| GUUAAUAUUC | 3 |
| UCUAAUUAG | 2 |
| GUCAAGAUUC | 1 |
| GUUAAAAUUC | 1 |
| GUUAAGAUUC | 1 |
| GUUGAUAUUC | 1 |
| CAUCAGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAGUU | 4 |
| UUAAUAUU | 3 |
| CUAAUUA | 2 |
| UCAAGAUU | 1 |
| UUAAAAUU | 1 |
| UUAAGAUU | 1 |
| UUGAUAUU | 1 |
| AUCAGUA | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (14)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.46 | Max 0.93
Coloring options: