IL_00168.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4		5		6	1-4	1-6	2-3	2-4	2-5	3-5	4-5	4-6
1	IL_3Q1Q_005	3Q1Q	0.5642	0		B	RNase P RNA	C	126	G	127	*	C	148	A	149	A	150	G	151		cWW	cWW	ncWW		ncSH		ncSH
2	IL_1U9S_004	1U9S	0.6048	0	Major groove minor groove platform; mini C-loop	A	RIBONUCLEASE P	C	133	G	134	*	C	164	A	165	A	166	G	167	ncBW	cWW	cWW					cSH
3	IL_4V8P_176	4V8P	0.4116	0		D1	LSU rRNA	U	469	C	470	*	G	507	A	508	A	509	A	510	ntHS	cWW	ncWW		cSW
4	IL_4V8P_154	4V8P	0.3207	0	Major groove minor groove platform; mini C-loop (H)	C3	5S rRNA	C	28	C	29	*	G	48	A	49	A	50	G	51		cWW	cWW		ncSW
5	IL_5J7L_357	5J7L	0.2657	0	Major groove minor groove platform; mini C-loop	DB	5S rRNA	C	30	C	31	*	G	51	A	52	A	53	G	54	ncBW	cWW	cWW		cSW		ncSH	ncSH
6	IL_5FDV_113	5FDV	0.2384	0	Major groove minor groove platform; mini C-loop (H)	1B	5S rRNA	C	30	C	31	*	G	51	A	52	A	53	G	54	ncBW	cWW	cWW		cSW		cSH
7	IL_4V9F_103	4V9F	0.2434	0	Major groove minor groove platform; mini C-loop	9	5S rRNA	C	29	C	30	*	G	50	A	51	A	52	G	53	ncBW	cWW	cWW		cSW		cSH
8	IL_4V88_423	4V88	0.1607	0	Major groove minor groove platform; mini C-loop	A6	SSU rRNA	A	746	C	747	*	G	802	A	803	A	804	U	805		cWW	cWW				cSH
9	IL_1S03_003	1S03	0.0000	0	Major groove minor groove platform; mini C-loop	A	47-MER	G	37	U	38	*	A	12	A	13	A	14	C	15	ntHW	cWW	cWW		ncSW		cSH	ncSH
10	IL_1S03_007	1S03	0.0282	0	Major groove minor groove platform; mini C-loop	B	47-MER	G	37	U	38	*	A	12	A	13	A	14	C	15	ntHW	cWW	cWW		ncSW		cSH	ncSH
11	IL_5J7L_029	5J7L	0.0791	0	Major groove minor groove platform; mini C-loop	AA	SSU rRNA	G	597	U	598	*	A	640	U	641	A	642	C	643		cWW	cWW		ncSW		cSH	ncSH
12	IL_4PDB_002	4PDB	0.0763	0	Major groove minor groove platform; mini C-loop	I	SELEX RNA aptamer	A	14	U	15	*	A	24	U	25	A	26	U	27		cWW	cWW		ncSW		ncSH
13	IL_4LFB_025	4LFB	0.0835	0	Major groove minor groove platform; mini C-loop	A	SSU rRNA	G	597	U	598	*	A	640	U	641	A	642	C	643		cWW	cWW		ncSW		ncSH	ncSH
14	IL_1I6U_002	1I6U	0.0908	0	Major groove minor groove platform; mini C-loop	C	16S RRNA FRAGMENT	G	12	U	13	*	A	24	U	25	A	26	C	27		cWW	cWW		ncSW		cSH	ncSH
15	IL_5J7L_316	5J7L	0.2446	0	Major groove minor groove platform; mini C-loop	DA	LSU rRNA	C	1893	C	1894	*	G	1846	A	1847	A	1848	G	1849	ncBW	cWW	cWW		ncSW		ncSH
16	IL_4IOA_068	4IOA	0.3234	0	Major groove minor groove platform; mini C-loop (H)	X	LSU rRNA	C	1876	C	1877	*	G	1838	A	1839	A	1840	G	1841		ncWW	cWW		ntSH			ncSH
17	IL_4V9F_068	4V9F	0.4380	0	Major groove minor groove platform; mini C-loop	0	LSU rRNA	A	1934	C	1935	*	G	1902	U	1903	A	1904	U	1905		cWW	cWW
18	IL_1U9S_002	1U9S	0.5649	1	Major groove intercalation	A	RIBONUCLEASE P	C	228	C	229	*	G	111	A	112	A	114	G	115		cWW	cWW
19	IL_1U9S_005	1U9S	0.5210	0	Minor groove platform, major groove intercalation	A	RIBONUCLEASE P	G	161	G	162	*	C	136	A	137	G	138	C	139		cWW	cWW		ntSH
20	IL_3TZR_001	3TZR	0.6248	3	Major groove intercalation	B+A	RNA (16-mer)	G	110	C	111	*	G	52	A	53	A	57	C	58		cWW	cWW		ncSW

3D structures

Complete motif including flanking bases

Sequence	Counts
CC*GAAG	6
GU*AUAC	3
CG*CAAG	2
GU*AAAC	2
UC*GAAA	1
AC*GAAU	1
AU*AUAU	1
AC*GUAU	1
CC*GAAAG	1
GG*CAGC	1
GC*GAACUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
*AA	12
*UA	5
*AAA	1
*AG	1
*AACUA	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_00168.2 Version IL_00168.2 of this group appears in releases 3.3 to 3.11 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_00168.2 Version IL_00168.2 of this group appears in releases 3.3 to 3.11

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Csv

Json