Motif IL_01080.1 Version IL_01080.1 of this group appears in releases 1.1 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2AW7_068 | 2AW7 | 0.3192 | 2 | A | 16S ribosomal RNA | U | 1445 | C | 1448 | * | G | 1455 | A | 1456 | G | 1457 | cWW | cWW | |
| 2 | IL_1S72_016 | 1S72 | 0.0000 | 4 | 0 | LSU rRNA | U | 548 | G | 553 | * | C | 606 | G | 607 | A | 608 | cWW | cWW | |
| 3 | IL_2PXV_001 | 2PXV | 0.3085 | 4 | B | 4.5 S RNA | U | 139 | G | 144 | * | C | 167 | A | 168 | A | 169 | cWW | cWW | |
| 4 | IL_1FJG_057 | 1FJG | 0.5323 | 2 | A | SSU rRNA | G | 1491 | G | 1494 | * | C | 1407 | A | 1408 | C | 1409 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAC*GAG | 1 |
| UACAAG*CGA | 1 |
| UACCAG*CAA | 1 |
| GAAG*CAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*A | 2 |
| ACAA*G | 1 |
| ACCA*A | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_01080.1 | Only in the parent motif |
|---|---|---|---|
| IL_01239.1 Compare | IL_2PXV_001, IL_1FJG_057, IL_2AW7_068 | IL_1S72_016 | IL_2ZJR_101, IL_1LNG_001 |
| IL_91132.1 Compare | IL_1S72_016 | IL_2PXV_001, IL_1FJG_057, IL_2AW7_068 | IL_3BNL_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_01080.1 | Only in the child motif |
|---|---|---|---|
| IL_01080.2 Compare | IL_2PXV_001, IL_1FJG_057, IL_1S72_016, IL_2AW7_068 | IL_3TD1_005 |
Coloring options: