Motif IL_01080.2 Version IL_01080.2 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_057 | 1FJG | 0.1490 | 2 | A | SSU rRNA | G | 1491 | G | 1494 | * | C | 1407 | A | 1408 | C | 1409 | cWW | cWW |
| 2 | IL_3TD1_005 | 3TD1 | 0.0000 | 2 | A+B | RNA (23-mer) | G | 16 | G | 19 | * | C | 30 | G | 31 | C | 32 | cWW | cWW |
| 3 | IL_2PXV_001 | 2PXV | 0.4536 | 4 | B | 4.5 S RNA | U | 139 | G | 144 | * | C | 167 | A | 168 | A | 169 | cWW | cWW |
| 4 | IL_1S72_016 | 1S72 | 0.5228 | 4 | 0 | LSU rRNA | U | 548 | G | 553 | * | C | 606 | G | 607 | A | 608 | cWW | cWW |
| 5 | IL_2AW7_068 | 2AW7 | 0.5383 | 2 | A | 16S ribosomal RNA | U | 1445 | C | 1448 | * | G | 1455 | A | 1456 | G | 1457 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAG*CAC | 1 |
| GAAG*CGC | 1 |
| UACCAG*CAA | 1 |
| UACAAG*CGA | 1 |
| UAAC*GAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*A | 2 |
| AA*G | 1 |
| ACCA*A | 1 |
| ACAA*G | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_01080.2 | Only in the parent motif |
|---|---|---|---|
| IL_01080.1 Compare | IL_2PXV_001, IL_1FJG_057, IL_1S72_016, IL_2AW7_068 | IL_3TD1_005 | |
| IL_56465.5 Compare | IL_3TD1_005 | IL_2PXV_001, IL_1FJG_057, IL_1S72_016, IL_2AW7_068 | IL_2QBG_084, IL_3TD1_002, IL_4IOA_056, IL_1DUH_005, IL_3U5H_009, IL_3U5H_004, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_4A1B_018, IL_2QBG_027, IL_3U5H_146, IL_2AW7_025, IL_2QBG_029, IL_1S72_005, IL_4NVV_005, IL_4A1B_073, IL_4NVV_026, IL_1O9M_001, IL_4IOA_085, IL_2QBG_090, IL_1MWL_003, IL_4NVV_087, IL_1MWL_002, IL_4IOA_021, IL_1ZX7_007, IL_1VW3_093, IL_2AW7_047, IL_1ZX7_001, IL_3U5H_037, IL_3MOJ_004, IL_4A1B_001, IL_4IOA_102, IL_1S72_079, IL_4IOA_005, IL_2QBG_010, IL_4A1B_042, IL_4IOA_046, IL_1VW3_010, IL_4A1B_009, IL_2O3X_002, IL_2AW7_024, IL_1VW3_058, IL_2O3X_003, IL_1T0E_001, IL_1VW3_030, IL_1DUH_001, IL_2O3X_001, IL_3T4B_001, IL_4M30_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_01080.2 | Only in the child motif |
|---|---|---|---|
| IL_19268.1 Compare | IL_2PXV_001, IL_1S72_016, IL_2AW7_068 | IL_3TD1_005, IL_1FJG_057 | |
| IL_18271.1 Compare | IL_3TD1_005, IL_1FJG_057 | IL_2PXV_001, IL_1S72_016, IL_2AW7_068 | IL_4IOA_102, IL_1MWL_003, IL_1MWL_002, IL_1DUH_001, IL_1DUH_005, IL_3TD1_002, IL_3J7A_015, IL_4IOA_023, IL_1O9M_002, IL_2O3X_002 |
- Annotations
-
- (5)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.15 | Avg 0.34 | Max 0.55
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