Motif IL_01239.1 Version IL_01239.1 of this group appears in releases 0.5 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 3-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_101 | 2ZJR | 0.5375 | 0 | X | LSU rRNA | G | 2818 | G | 2819 | C | 2820 | * | G | 2846 | G | 2847 | A | 2848 | C | 2849 | cWW | cWW | |
| 2 | IL_2AW7_068 | 2AW7 | 0.0000 | 0 | A | 16S ribosomal RNA | G | 1455 | A | 1456 | G | 1457 | * | U | 1445 | A | 1446 | A | 1447 | C | 1448 | cWW | cWW | |
| 3 | IL_1LNG_001 | 1LNG | 0.5285 | 0 | B | SRP S RNA | G | 152 | A | 153 | G | 154 | * | U | 175 | A | 176 | A | 177 | C | 178 | cWW | cWW | |
| 4 | IL_1FJG_057 | 1FJG | 0.6814 | 0 | A | SSU rRNA | C | 1407 | A | 1408 | C | 1409 | * | G | 1491 | A | 1492 | A | 1493 | G | 1494 | cWW | cWW | |
| 5 | IL_2PXV_001 | 2PXV | 0.7829 | 2 | B | 4.5 S RNA | C | 167 | A | 168 | A | 169 | * | U | 139 | C | 141 | C | 142 | G | 144 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAG*UAAC | 2 |
| GGC*GGAC | 1 |
| CAC*GAAG | 1 |
| CAA*UACCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*AA | 3 |
| G*GA | 1 |
| A*ACCA | 1 |
Release history
| Release | 0.5 | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2011-12-08 | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_01239.1 | Only in the parent motif |
|---|---|---|---|
| IL_71234.1 Compare | IL_2ZJR_101, IL_1LNG_001 | IL_2PXV_001, IL_1FJG_057, IL_2AW7_068 | IL_2QEK_002, IL_3F1H_106 |
| IL_13561.1 Compare | IL_2PXV_001 | IL_2ZJR_101, IL_2AW7_068, IL_1FJG_057, IL_1LNG_001 | IL_2GIS_003 |
| IL_11363.2 Compare | IL_1FJG_057 | IL_2ZJR_101, IL_2PXV_001, IL_2AW7_068, IL_1LNG_001 | IL_2ZJR_055, IL_3F1H_088, IL_2QWY_008, IL_2QWY_005, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_1O9M_001, IL_1T0E_001, IL_1S72_005, IL_2ZJR_084, IL_2ZJR_044, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_1ZX7_007, IL_1ZX7_005, IL_2ZJR_005, IL_1ZX7_003, IL_3G78_012, IL_3MOJ_004, IL_1FJG_012, IL_1S72_079, IL_1ZX7_001, IL_2O3X_001, IL_2O3X_002, IL_2O3X_003, IL_3F1H_023, IL_3F1H_005 |
Children motifs
| Child motif | Common motif instances | Only in IL_01239.1 | Only in the child motif |
|---|---|---|---|
| IL_01080.1 Compare | IL_2PXV_001, IL_1FJG_057, IL_2AW7_068 | IL_2ZJR_101, IL_1LNG_001 | IL_1S72_016 |
| IL_19898.1 Compare | IL_1LNG_001 | IL_2ZJR_101, IL_2PXV_001, IL_1FJG_057, IL_2AW7_068 | IL_3BNL_003 |
- Annotations
- Basepair signature
- cWW-L-R-R-cWW
- Heat map statistics
- Min 0.53 | Avg 0.54 | Max 0.89
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