#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_1QBP_0021QBP0.90450Tandem non-canonical cWW pairsB+ARNA (15-mer)U22U23C24G25*U7U8C9G10cWWncWWcWWcWW
2 IL_165D_001165D0.88010A+BDNA/RNA (5'-R(*GP*CP*UP*UP*CP*GP*GP*CP*)-D(*(BRU))-3')U3U4C5G6*U12U13C14G15cWWcWWcWWcWW
3 IL_422D_001422D0.88850Tandem non-canonical cWW pairsB+ARNA (12-mer)U19U20C21G22*U7U8C9G10cWWcWWcWWcWW
4 IL_4ERD_0024ERD0.87040Tandem non-canonical cWW pairsD+CRNA (22-mer)U127U128C141G142*U127U128C141G142cWWcWWcWWcWW
5 IL_3GX5_0043GX50.13352ARNA (94-MER)U64U67G68C69*G82A83A84A85cWWcWW
6 IL_4B5R_0044B5R0.00002Pseudoknot (H)A SAM-I riboswitchU64U67G68C69*G82A83A84A85cWWcWW
7 IL_4AOB_0044AOB0.16032PseudoknotA SAM-I riboswitchU64U67G68C69*G82A83A84A85cWWcWW
8 IL_4KQY_0064KQY0.24332PseudoknotA SAM-I riboswitchU85A88G89C90*G106G107A108A109cWWcWW
9 IL_3V7E_0093V7E0.29482D SAM-I riboswitchU296U299G300C301*G314A315A316A317cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UUCG*UUCG4
UCCUGC*GAAA4
UCCAGC*GGAA1
Non-Watson-Crick part of the motif
SequenceCounts
UC*UC4
CCUG*AA4
CCAG*GA1

Release history

Release1.61.71.81.91.101.111.121.131.141.15
Date2013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-272014-06-20
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_02809.3Only in the parent motif
IL_02809.2
Compare
IL_4ERD_002, IL_4B5R_004, IL_165D_001, IL_3V7E_009, IL_422D_001, IL_3GX5_004, IL_1QBP_002, IL_4AOB_004IL_4KQY_006IL_3NPB_007

Children motifs

Child motifCommon motif instancesOnly in IL_02809.3Only in the child motif
IL_02809.4
Compare
IL_4ERD_002, IL_4B5R_004, IL_3GX5_004, IL_3V7E_009, IL_4KQY_006, IL_422D_001, IL_165D_001, IL_1QBP_002, IL_4AOB_004IL_1VWW_022
Annotations
  • (3)
  • Tandem non-canonical cWW pairs (3)
  • Pseudoknot (2)
  • Pseudoknot (H) (1)
  • Basepair signature
    cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.09 | Avg 0.54 | Max 1.00
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.4158 s