Motif IL_03350.1 Version IL_03350.1 of this group appears in releases 3.88 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 1-13 | 2-11 | 8-12 | 9-10 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5CNR_004 | 5CNR | 0.1458 | 0 | Reverse kink-turn related | A+B | RNA (16-mer) + RNA (11-mer) | C | 5 | U | 6 | A | 7 | C | 8 | C | 9 | C | 10 | A | 11 | C | 12 | C | 13 | * | G | 38 | A | 39 | G | 40 | G | 41 | cWW | tWH | cWW | cWW |
| 2 | IL_4PHY_005 | 4PHY | 0.0000 | 0 | Reverse kink-turn related | A+B | RNA (26-MER) + RNA (20-mer) | C | 5 | U | 6 | C | 7 | C | 8 | C | 9 | C | 10 | A | 11 | C | 12 | C | 13 | * | G | 38 | A | 39 | G | 40 | G | 41 | cWW | tWH | cWW | cWW |
| 3 | IL_4P97_005 | 4P97 | 0.6224 | 0 | Reverse kink-turn related | A+B | RNA (16-mer) + RNA (11-mer) | C | 5 | U | 6 | A | 7 | C | 8 | C | 9 | C | 10 | A | 11 | C | 12 | C | 13 | * | G | 38 | A | 39 | G | 40 | G | 41 | cWW | tWH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUACCCACC*GAGG | 2 |
| CUCCCCACC*GAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UACCCAC*AG | 2 |
| UCCCCAC*AG | 1 |
- Annotations
-
- Reverse kink-turn related (3)
- Basepair signature
- cWW-tWH-cWW-L-L-cWW-L-L-L
- Heat map statistics
- Min 0.15 | Avg 0.31 | Max 0.64
Coloring options: