Motif IL_04346.1 Version IL_04346.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-14 | 3-13 | 4-12 | 5-6 | 6-11 | 7-10 | 8-9 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V8P_156 | 4V8P | 0.2141 | 0 | 8x7 Sarcin-Ricin; G-bulge | C3 | 5S rRNA | G | 71 | U | 72 | U | 73 | A | 74 | G | 75 | U | 76 | A | 77 | C | 78 | * | G | 98 | G | 99 | A | 100 | A | 101 | G | 102 | U | 103 | C | 104 | cWW | tHH | ncSH | tWH | tHS | cWW | ||
| 2 | IL_4V8P_276 | 4V8P | 0.1943 | 0 | 8x7 Sarcin-Ricin; G-bulge | D1 | LSU rRNA | G | 3007 | U | 3008 | U | 3009 | A | 3010 | G | 3011 | U | 3012 | A | 3013 | C | 3014 | * | G | 3019 | G | 3020 | A | 3021 | A | 3022 | C | 3023 | A | 3024 | C | 3025 | cWW | ntSH | tHH | tWH | tHS | cWW | ||
| 3 | IL_4IOA_007 | 4IOA | 0.1821 | 0 | 8x7 Sarcin-Ricin; G-bulge | X | LSU rRNA | G | 215 | U | 216 | U | 217 | A | 218 | G | 219 | U | 220 | A | 221 | G | 222 | * | C | 230 | G | 231 | A | 232 | A | 233 | C | 234 | C | 235 | C | 236 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
| 4 | IL_4V8P_160 | 4V8P | 0.1547 | 0 | 8x7 Sarcin-Ricin; G-bulge | D1 | LSU rRNA | C | 80 | C | 81 | C | 82 | A | 83 | G | 84 | U | 85 | A | 86 | A | 87 | * | U | 95 | G | 96 | A | 97 | A | 98 | C | 99 | A | 100 | G | 101 | cWW | ncWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 5 | IL_4WF9_009 | 4WF9 | 0.1441 | 0 | 8x7 Sarcin-Ricin; G-bulge | X | LSU rRNA | C | 241 | U | 242 | U | 243 | A | 244 | G | 245 | U | 246 | A | 247 | G | 248 | * | C | 256 | G | 257 | A | 258 | A | 259 | A | 260 | C | 261 | G | 262 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
| 6 | IL_1Q96_001 | 1Q96 | 0.0000 | 0 | 8x7 Sarcin-Ricin; G-bulge | A | sarcin/ricin 28S rRNA | C | 6 | U | 7 | C | 8 | A | 9 | G | 10 | U | 11 | A | 12 | U | 13 | * | A | 18 | G | 19 | A | 20 | A | 21 | C | 22 | C | 23 | G | 24 | cWW | tSH | cSH | tWH | tHS | cWW | ||
| 7 | IL_1JBR_001 | 1JBR | 0.0890 | 0 | 8x7 Sarcin-Ricin; G-bulge | C+F | RNA (18-mer) + RNA (13-mer) | C | 6 | U | 7 | C | 8 | A | 9 | G | 10 | U | 11 | A | 12 | C | 13 | * | G | 18 | G | 19 | A | 20 | A | 21 | C | 22 | C | 23 | G | 24 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
| 8 | IL_5J7L_250 | 5J7L | 0.1868 | 0 | 8x7 Sarcin-Ricin; G-bulge | DA | LSU rRNA | C | 201 | U | 202 | A | 203 | A | 204 | G | 205 | U | 206 | A | 207 | C | 208 | * | G | 188 | G | 189 | A | 190 | A | 191 | C | 192 | U | 193 | G | 194 | cWW | cwW | tSH | tHH | cSH | tWH | tHS | cWW |
| 9 | IL_4IOA_006 | 4IOA | 0.2008 | 0 | 8x7 Sarcin-Ricin; G-bulge | X | LSU rRNA | C | 178 | U | 179 | C | 180 | A | 181 | G | 182 | U | 183 | A | 184 | C | 185 | * | G | 165 | G | 166 | A | 167 | A | 168 | C | 169 | U | 170 | G | 171 | cWW | cwW | ntSH | tHH | cSH | tWH | tHS | cWW |
| 10 | IL_4Y4O_184 | 4Y4O | 0.1740 | 0 | 8x7 Sarcin-Ricin; G-bulge | 2A | LSU rRNA | C | 201 | U | 202 | C | 203 | A | 204 | G | 205 | U | 206 | A | 207 | C | 208 | * | G | 188 | G | 189 | A | 190 | A | 191 | C | 192 | U | 193 | G | 194 | cWW | cwW | tSH | tHH | cSH | tWH | tHS | cWW |
| 11 | IL_4V9F_006 | 4V9F | 0.1981 | 0 | 8x7 Sarcin-Ricin; G-bulge | 0 | LSU rRNA | C | 171 | U | 172 | C | 173 | A | 174 | G | 175 | U | 176 | A | 177 | U | 178 | * | A | 158 | G | 159 | A | 160 | A | 161 | C | 162 | U | 163 | G | 164 | cWW | cwW | tSH | tHH | cSH | tWH | tHS | cWW |
| 12 | IL_4IOA_047 | 4IOA | 0.3485 | 0 | 8x7 Sarcin-Ricin; G-bulge | X | LSU rRNA | A | 1275 | U | 1276 | G | 1277 | A | 1278 | G | 1279 | U | 1280 | A | 1281 | A | 1282 | * | U | 1994 | G | 1995 | A | 1996 | A | 1997 | A | 1998 | U | 1999 | U | 2000 | cWW | cwW | tSH | cSH | tWH | tHS | cWW | |
| 13 | IL_4Y4O_225 | 4Y4O | 0.2703 | 0 | 8x7 Sarcin-Ricin; G-bulge | 2A | LSU rRNA | A | 1262 | U | 1263 | G | 1264 | A | 1265 | G | 1266 | U | 1267 | A | 1268 | A | 1269 | * | U | 2011 | G | 2012 | A | 2013 | A | 2014 | A | 2015 | U | 2016 | U | 2017 | cWW | cwW | tSH | tHH | cSH | tWH | tHS | cWW |
| 14 | IL_5J7L_289 | 5J7L | 0.2775 | 0 | 8x7 Sarcin-Ricin; G-bulge | DA | LSU rRNA | A | 1262 | U | 1263 | A | 1264 | A | 1265 | G | 1266 | U | 1267 | A | 1268 | A | 1269 | * | U | 2011 | G | 2012 | A | 2013 | A | 2014 | A | 2015 | U | 2016 | U | 2017 | cWW | cwW | tSH | tHH | cSH | tWH | tHS | cWW |
| 15 | IL_4WF9_048 | 4WF9 | 0.3587 | 0 | 8x7 Sarcin-Ricin; G-bulge | X | LSU rRNA | G | 1300 | U | 1301 | G | 1302 | A | 1303 | G | 1304 | U | 1305 | A | 1306 | G | 1307 | * | U | 2038 | G | 2039 | A | 2040 | A | 2041 | A | 2042 | U | 2043 | C | 2044 | cWW | cwW | tSH | tHH | ncSW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCAGUAC*GGAACUG | 2 |
| AUGAGUAA*UGAAAUU | 2 |
| GUUAGUAC*GGAAGUC | 1 |
| GUUAGUAC*GGAACAC | 1 |
| GUUAGUAG*CGAACCC | 1 |
| CCCAGUAA*UGAACAG | 1 |
| CUUAGUAG*CGAAACG | 1 |
| CUCAGUAU*AGAACCG | 1 |
| CUCAGUAC*GGAACCG | 1 |
| CUAAGUAC*GGAACUG | 1 |
| CUCAGUAU*AGAACUG | 1 |
| AUAAGUAA*UGAAAUU | 1 |
| GUGAGUAG*UGAAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAGUA*GAACU | 3 |
| UGAGUA*GAAAU | 3 |
| UCAGUA*GAACC | 2 |
| UUAGUA*GAAGU | 1 |
| UUAGUA*GAACA | 1 |
| UUAGUA*GAACC | 1 |
| CCAGUA*GAACA | 1 |
| UUAGUA*GAAAC | 1 |
| UAAGUA*GAACU | 1 |
| UAAGUA*GAAAU | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- 8x7 Sarcin-Ricin; G-bulge (15)
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.06 | Avg 0.23 | Max 0.37
Coloring options: