Motif IL_05564.4 Version IL_05564.4 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-3 | 2-6 | 3-6 | 4-5 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_7D81_002 | 7D81 | 0.5061 | 1 | A | nadA RNA | G | 33 | G | 34 | U | 35 | G | 37 | * | C | 22 | G | 23 | C | 24 | cWW | ncwW | cWW | |||
2 | IL_5TBW_056 | 5TBW | 0.3693 | 1 | Major groove platform with extra cWW | 1 | LSU rRNA | G | 1262 | G | 1264 | U | 1265 | G | 1266 | * | C | 1275 | U | 1276 | C | 1277 | cWW | ncSH | cWw | ncWW | |
3 | IL_8C3A_059 | 8C3A | 0.3371 | 1 | Major groove platform with extra cWW (H) | 1 | LSU rRNA | G | 1258 | G | 1260 | U | 1261 | G | 1262 | * | C | 1271 | U | 1272 | C | 1273 | cWW | ncSH | ncWw | cWW | |
4 | IL_5D8H_003 | 5D8H | 0.2535 | 1 | Major groove platform with extra cWW | A | LSU rRNA | G | 1197 | G | 1199 | U | 1200 | G | 1201 | * | C | 1210 | U | 1211 | C | 1212 | cWW | cSH | cWw | cWW | |
5 | IL_1MMS_002 | 1MMS | 0.2630 | 1 | Major groove platform with extra cWW | C | 23S RIBOSOMAL RNA | G | 1087 | G | 1089 | U | 1090 | G | 1091 | * | C | 1100 | U | 1101 | C | 1102 | cWW | cSH | cWw | cWW | |
6 | IL_7A0S_019 | 7A0S | 0.0000 | 0 | Major groove platform with extra cWW | X | LSU rRNA | G | 751 | G | 752 | U | 753 | G | 754 | * | C | 769 | U | 770 | C | 771 | cWW | cSH | cWw | cWW | |
7 | IL_8VTW_021 | 8VTW | 0.0921 | 0 | Major groove platform with extra cWW (H) | 1A | LSU rRNA | G | 738 | G | 739 | U | 740 | G | 741 | * | C | 756 | U | 757 | C | 758 | cWW | cSH | cWw | cWW | |
8 | IL_5TBW_031 | 5TBW | 0.1183 | 0 | Major groove platform with extra cWW | 1 | LSU rRNA | G | 869 | G | 870 | U | 871 | U | 872 | * | A | 888 | U | 889 | C | 890 | cWW | cSH | cWw | cWW | |
9 | IL_8C3A_034 | 8C3A | 0.1141 | 0 | Major groove platform with extra cWW (H) | 1 | LSU rRNA | G | 865 | G | 866 | U | 867 | U | 868 | * | A | 884 | U | 885 | C | 886 | cWW | cSH | cWw | cWW | |
10 | IL_4V9F_028 | 4V9F | 0.1339 | 0 | Major groove platform with extra cWW | 0 | LSU rRNA | G | 830 | U | 831 | U | 832 | G | 833 | * | C | 849 | U | 850 | C | 851 | cWW | cSH | cWw | cWW | |
11 | IL_4V88_397 | 4V88 | 0.1542 | 1 | Major groove platform with extra cWW | A6 | SSU rRNA | U | 259 | U | 261 | U | 262 | C | 263 | * | G | 204 | U | 205 | A | 206 | cWW | cSH | cWw | cWW | |
12 | IL_8C3A_405 | 8C3A | 0.1695 | 1 | Major groove platform with extra cWW (H) | CM | SSU rRNA | U | 257 | U | 259 | U | 260 | C | 261 | * | G | 202 | U | 203 | A | 204 | cWW | cSH | cWw | cWW | |
13 | IL_364D_001 | 364D | 0.8612 | 0 | A+C | RNA (13-mer) + RNA (31-mer) | C | 3 | 1SC | 4||B | 1SC | 4||A | U | 5 | * | A | 115 | G | 116 | G | 117 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAGUG*CUC | 4 |
GGUG*CUC | 2 |
GGUU*AUC | 2 |
UUUUC*GUA | 2 |
GGUGG*CGC | 1 |
GUUG*CUC | 1 |
C(1SC)(1SC)U*AGG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AGU*U | 4 |
GU*U | 4 |
UUU*U | 2 |
GUG*G | 1 |
UU*U | 1 |
(1SC)(1SC)*G | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform with extra cWW (7)
- Major groove platform with extra cWW (H) (4)
- (2)
- Basepair signature
- cWW-cSH-cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.36 | Max 0.92
Coloring options: