#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 71-72-32-63-64-5
1 IL_7D81_0027D810.50611AnadA RNAG33G34U35G37*C22G23C24cWWncwWcWW
2 IL_5TBW_0565TBW0.36931Major groove platform with extra cWW1 LSU rRNAG1262G1264U1265G1266*C1275U1276C1277cWWncSHcWwncWW
3 IL_8C3A_0598C3A0.33711Major groove platform with extra cWW (H)1 LSU rRNAG1258G1260U1261G1262*C1271U1272C1273cWWncSHncWwcWW
4 IL_5D8H_0035D8H0.25351Major groove platform with extra cWWA LSU rRNAG1197G1199U1200G1201*C1210U1211C1212cWWcSHcWwcWW
5 IL_1MMS_0021MMS0.26301Major groove platform with extra cWWC23S RIBOSOMAL RNAG1087G1089U1090G1091*C1100U1101C1102cWWcSHcWwcWW
6 IL_7A0S_0197A0S0.00000Major groove platform with extra cWWX LSU rRNAG751G752U753G754*C769U770C771cWWcSHcWwcWW
7 IL_8VTW_0218VTW0.09210Major groove platform with extra cWW (H)1A LSU rRNAG738G739U740G741*C756U757C758cWWcSHcWwcWW
8 IL_5TBW_0315TBW0.11830Major groove platform with extra cWW1 LSU rRNAG869G870U871U872*A888U889C890cWWcSHcWwcWW
9 IL_8C3A_0348C3A0.11410Major groove platform with extra cWW (H)1 LSU rRNAG865G866U867U868*A884U885C886cWWcSHcWwcWW
10 IL_4V9F_0284V9F0.13390Major groove platform with extra cWW0 LSU rRNAG830U831U832G833*C849U850C851cWWcSHcWwcWW
11 IL_4V88_3974V880.15421Major groove platform with extra cWWA6 SSU rRNAU259U261U262C263*G204U205A206cWWcSHcWwcWW
12 IL_8C3A_4058C3A0.16951Major groove platform with extra cWW (H)CM SSU rRNAU257U259U260C261*G202U203A204cWWcSHcWwcWW
13 IL_364D_001364D0.86120A+CRNA (13-mer) + RNA (31-mer)C31SC4||B1SC4||AU5*A115G116G117cWWcWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAGUG*CUC4
GGUG*CUC2
GGUU*AUC2
UUUUC*GUA2
GGUGG*CGC1
GUUG*CUC1
C(1SC)(1SC)U*AGG1
Non-Watson-Crick part of the motif
SequenceCounts
AGU*U4
GU*U4
UUU*U2
GUG*G1
UU*U1
(1SC)(1SC)*G1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform with extra cWW (7)
  • Major groove platform with extra cWW (H) (4)
  • (2)
  • Basepair signature
    cWW-cSH-cWW-cWW
    Heat map statistics
    Min 0.07 | Avg 0.36 | Max 0.92
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