Motif IL_06136.1 Version IL_06136.1 of this group appears in releases 3.77 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_5LR3_002 | 5LR3 | 0.3781 | 0 | Quadruple sheared | A+B | RNA (10-mer) | C | 3 | G | 4 | G | 5 | A | 6 | U | 7 | G | 8 | * | C | 3 | G | 4 | G | 5 | A | 6 | U | 7 | G | 8 | cWW | tSH | tSH | tHS | tHS | cWW |
2 | IL_3R9W_001 | 3R9W | 0.2183 | 0 | Quadruple sheared | B | RNA301 | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | * | G | 1515||||2_455 | G | 1516||||2_455 | G | 1517||||2_455 | A | 1518||||2_455 | A | 1519||||2_455 | C | 1520||||2_455 | cWW | tSH | ntSH | ntHS | tHS | cWW |
3 | IL_3FTF_001 | 3FTF | 0.0000 | 0 | Quadruple sheared | C+D | RNA (22-mer) | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | * | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | cWW | tSH | ntSH | tHS | tHS | cWW |
4 | IL_3FTE_001 | 3FTE | 0.1692 | 0 | Quadruple sheared | C+D | RNA (22-mer) | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | * | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | cWW | tSH | ntHS | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGGAAC*GGGAAC | 3 |
CGGAUG*CGGAUG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GGAA*GGAA | 3 |
GGAU*GGAU | 1 |
Release history
Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Quadruple sheared (4)
- Basepair signature
- cWW-tSH-tSH-tHS-tHS-cWW
- Heat map statistics
- Min 0.17 | Avg 0.22 | Max 0.41
Coloring options: