Motif IL_06211.2 Version IL_06211.2 of this group appears in releases 1.9 to 1.11
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1FJG_003 | 1FJG | 0.3088 | 2 | A | SSU rRNA | C | 47 | U | 49 | A | 50 | G | 52 | * | U | 359 | A | 360 | G | 361 | cWW | cWW | |
2 | IL_2AW7_003 | 2AW7 | 0.0000 | 2 | A | 16S ribosomal RNA | C | 47 | U | 49 | A | 50 | C | 52 | * | G | 359 | G | 360 | G | 361 | cWW | tSs | cWW |
3 | IL_3U5F_004 | 3U5F | 0.3167 | 3 | 6 | 18S rRNA | G | 42 | U | 45 | A | 46 | G | 48 | * | C | 431 | G | 432 | C | 433 | cWW | ntSs | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CCUAAG*UAG | 1 |
CCUAAC*GGG | 1 |
GAUUAAG*CGC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CUAA*A | 1 |
CUAA*G | 1 |
AUUAA*G | 1 |
Release history
Release | 1.9 | 1.10 | 1.11 |
---|---|---|---|
Date | 2013-12-07 | 2014-01-04 | 2014-02-01 |
Status | Updated, 2 parents | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_06211.2 | Only in the parent motif |
---|---|---|---|
IL_06211.1 Compare | IL_2AW7_003, IL_1FJG_003 | IL_3U5F_004 | IL_4BPP_004 |
IL_20530.1 Compare | IL_3U5F_004 | IL_2AW7_003, IL_1FJG_003 |
Children motifs
Child motif | Common motif instances | Only in IL_06211.2 | Only in the child motif |
---|---|---|---|
IL_06211.3 Compare | IL_2AW7_003, IL_1FJG_003 | IL_3U5F_004 | IL_4BPP_004 |
IL_86336.1 Compare | IL_3U5F_004 | IL_2AW7_003, IL_1FJG_003 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-tSS-cWW
- Heat map statistics
- Min 0.31 | Avg 0.21 | Max 0.32
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