#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_3V2F_0253V2F0.77661 A23S Ribosomal RNAC844G845C846*G931A933G934cWWcWW
2 IL_1GID_0061GID0.49315 AP4-P6 RNA RIBOZYME DOMAING134U135A136*U182A187C189cWWcWHcWW
3 IL_1GID_0131GID0.46535 BP4-P6 RNA RIBOZYME DOMAING134U135A136*U182A187C189cWWcWHcWW
4 IL_1X8W_0051X8W0.46725 ATetrahymena ribozyme RNAG134U135A136*U182A187C189cWWcWHcWW
5 IL_3U5F_0223U5F0.33310 618S rRNAU406A407C408*G389G390A391cWWcWHcWW
6 IL_420D_001420D0.29170 B+ARNA (16-mer)A26A27U28*A5G6U7cWWcWHcWW
7 IL_420D_002420D0.30630 A+BRNA (16-mer)A10A11U12*A21G22U23cWWcWHcWW
8 IL_2XXA_0112XXA0.41051 G SSRP RNAA19G20C21*G78G79U81cWWcWHcWW
9 IL_2AW7_0112AW70.22170 A16S ribosomal RNAG144G145G146*C176G177C178cWWcWHcWW
10 IL_3U5F_0443U5F0.26020 618S rRNAC848C849A850*U822G823G824cWWncWHcWW
11 IL_3U5F_0703U5F0.24190 618S rRNAC1323G1324A1325*U1290G1291G1292cWWcWHcWW
12 IL_2R22_0012R220.06850 A+BRNA (13-mer)U6G7A8*U19G20A21cWWcWHcWW
13 IL_3CZW_0013CZW0.00000Isolated cWH basepairXRNA (16-mer)U10||||2_555G11||||2_555A12||||2_555*U7G8A9cWWcWHcWW
14 IL_3CZW_0023CZW0.00000Isolated cWH basepairXRNA (16-mer)U10G11A12*U7||||2_555G8||||2_555A9||||2_555cWWcWHcWW
15 IL_3SJ2_0033SJ20.10400Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C13G14G15*C7G8G9cWWcWHcWW
16 IL_3SJ2_0023SJ20.11450Isolated cWH basepairB+ARNA (17-mer)C10G11G12*C10G11G12cWWcWHcWW
17 IL_3SJ2_0013SJ20.11300Isolated cWH basepairB+ARNA (17-mer)C13G14G15*C7G8G9cWWcWHcWW
18 IL_4E5C_0014E5C0.15950Isolated cWH basepairA+BRNA (19-mer)C9G10G11*C9G10G11cWWcWHcWW
19 IL_3R1D_0023R1D0.18630Isolated cWH basepairB+ARNA (11-mer)C5G6G7*C5G6G7cWWcWHcWW
20 IL_406D_002406D0.34670Isolated cWH basepairA+ERNA (17-mer)U8||AG9||AG10||A*U25||AG26||AG27||AcWWncWHcWW
21 IL_3U5F_0233U5F0.66610 618S rRNAC411A412U413*A420A421G422cWWcWW
22 IL_3NJ7_0013NJ70.66880 B+ARNA (10-mer)C6A7G8*C3A4G5cWWcWW
23 IL_2ZJR_0292ZJR0.70090 X LSU rRNAA883C884A885*U917A918U919cWWcWW
24 IL_3U5H_1513U5H0.90261 85.8S rRNAU93C94A96*U64A65A66cWWncSWcWW
25 IL_3U5H_0723U5H0.87022 525S rRNAU1818U1819C1822*G1623G1624A1625cWWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGG*CGG5
GUA*UAAUAAGC3
UGA*UGA3
AAU*AGU2
CGC*GGAG1
UAC*GGA1
AGC*GGGU1
GGG*CGC1
CCA*UGG1
CGA*UGG1
UGG*UGG1
CAU*AAG1
CAG*CAG1
ACA*UAU1
UCGA*UAA1
UUUUC*GGA1
Non-Watson-Crick part of the motif
SequenceCounts
G*G11
U*AAUAAG3
A*G3
A*A2
G*GA1
G*GG1
C*G1
C*A1
CG*A1
UUU*G1
Annotations
  • Isolated cWH basepair (8)
  • Basepair signature
    cWW-cWH-cWW
    Heat map statistics
    Min 0.04 | Avg 0.52 | Max 1.09
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