Motif IL_11616.1 Version IL_11616.1 of this group appears in releases 0.6 to 0.6
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3R1C_013 | 3R1C | 0.6567 | 0 | M+N | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW | |
2 | IL_3R1C_004 | 3R1C | 0.5966 | 0 | c+d | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cWH | cWW | |
3 | IL_3U5F_070 | 3U5F | 0.4270 | 0 | 6 | 18S rRNA | C | 1323 | G | 1324 | A | 1325 | * | U | 1290 | G | 1291 | G | 1292 | cWW | cWH | cWW | |
4 | IL_3U5F_044 | 3U5F | 0.4156 | 0 | 6 | 18S rRNA | C | 848 | C | 849 | A | 850 | * | U | 822 | G | 823 | G | 824 | cWW | ncWH | cWW | |
5 | IL_2R22_001 | 2R22 | 0.5192 | 0 | A+B | RNA (13-mer) | U | 6 | G | 7 | A | 8 | * | U | 19 | G | 20 | A | 21 | cWW | cWH | cWW | |
6 | IL_1X8W_005 | 1X8W | 0.0000 | 5 | A | Tetrahymena ribozyme RNA | G | 134 | U | 135 | A | 136 | * | U | 182 | A | 187 | C | 189 | cWW | cWH | cWW | |
7 | IL_3SJ2_002 | 3SJ2 | 0.2768 | 0 | Isolated cWH basepair | B+A | RNA (17-mer) | C | 10 | G | 11 | G | 12 | * | C | 10 | G | 11 | G | 12 | cWW | cWH | cWW |
8 | IL_3SJ2_001 | 3SJ2 | 0.2779 | 0 | Isolated cWH basepair | B+A | RNA (17-mer) | C | 13 | G | 14 | G | 15 | * | C | 7 | G | 8 | G | 9 | cWW | cWH | cWW |
9 | IL_3SJ2_003 | 3SJ2 | 0.3907 | 0 | Isolated cWH basepair | A+B | RNA (19-mer) + RNA (17-mer) | C | 13 | G | 14 | G | 15 | * | C | 7 | G | 8 | G | 9 | cWW | cWH | cWW |
10 | IL_3CZW_002 | 3CZW | 0.4368 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 10 | G | 11 | A | 12 | * | U | 7||||2_555 | G | 8||||2_555 | A | 9||||2_555 | cWW | cWH | cWW |
11 | IL_3CZW_001 | 3CZW | 0.4303 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 10||||2_555 | G | 11||||2_555 | A | 12||||2_555 | * | U | 7 | G | 8 | A | 9 | cWW | cWH | cWW |
12 | IL_3R1C_007 | 3R1C | 0.4677 | 0 | g+h | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW | |
13 | IL_3R1C_002 | 3R1C | 0.4672 | 0 | b+a | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW | |
14 | IL_3R1C_005 | 3R1C | 0.4672 | 0 | f+e | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cWH | cWW | |
15 | IL_3R1C_001 | 3R1C | 0.4560 | 0 | a+b | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW | |
16 | IL_3R1C_006 | 3R1C | 0.4674 | 0 | e+f | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cWH | cWW | |
17 | IL_3R1C_009 | 3R1C | 0.4681 | 0 | i+j | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW | |
18 | IL_3R1C_011 | 3R1C | 0.4813 | 0 | Isolated cWH basepair | L+K | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cWH | cWW |
19 | IL_3R1C_018 | 3R1C | 0.4936 | 0 | Isolated cWH basepair | R+Q | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW |
20 | IL_3R1C_012 | 3R1C | 0.4830 | 0 | Isolated cWH basepair | K+L | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cWH | cWW |
21 | IL_3R1C_014 | 3R1C | 0.4831 | 0 | N+M | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW | |
22 | IL_3R1C_019 | 3R1C | 0.4953 | 0 | S+Y | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW | |
23 | IL_3R1C_017 | 3R1C | 0.4908 | 0 | Isolated cWH basepair | Q+R | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW |
24 | IL_3U5H_151 | 3U5H | 0.5401 | 1 | 8 | 5.8S rRNA | U | 93 | C | 94 | A | 96 | * | U | 64 | A | 65 | A | 66 | cWW | ncSW | cWW | |
25 | IL_3R1C_010 | 3R1C | 0.4798 | 0 | i+j | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cWH | cWW | |
26 | IL_3R1C_016 | 3R1C | 0.4903 | 0 | P+O | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW | |
27 | IL_1GID_006 | 1GID | 0.5304 | 5 | A | P4-P6 RNA RIBOZYME DOMAIN | G | 134 | U | 135 | A | 136 | * | U | 182 | A | 187 | C | 189 | cWW | cWH | cWW | |
28 | IL_420D_002 | 420D | 0.5236 | 0 | A+B | RNA (16-mer) | A | 10 | A | 11 | U | 12 | * | A | 21 | G | 22 | U | 23 | cWW | cWH | cWW | |
29 | IL_3R1C_021 | 3R1C | 0.5072 | 0 | T+U | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW | |
30 | IL_420D_001 | 420D | 0.5229 | 0 | B+A | RNA (16-mer) | A | 26 | A | 27 | U | 28 | * | A | 5 | G | 6 | U | 7 | cWW | cWH | cWW | |
31 | IL_1GID_013 | 1GID | 0.5310 | 5 | B | P4-P6 RNA RIBOZYME DOMAIN | G | 134 | U | 135 | A | 136 | * | U | 182 | A | 187 | C | 189 | cWW | cWH | cWW | |
32 | IL_3U5F_022 | 3U5F | 0.5245 | 0 | 6 | 18S rRNA | U | 406 | A | 407 | C | 408 | * | G | 389 | G | 390 | A | 391 | cWW | cWH | cWW | |
33 | IL_3R1C_026 | 3R1C | 0.5186 | 0 | Z+V | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW | |
34 | IL_2AW7_011 | 2AW7 | 0.5218 | 0 | A | 16S ribosomal RNA | G | 144 | G | 145 | G | 146 | * | C | 176 | G | 177 | C | 178 | cWW | cWH | cWW | |
35 | IL_3R1C_020 | 3R1C | 0.5056 | 0 | Y+S | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW | |
36 | IL_2XXA_011 | 2XXA | 0.5254 | 1 | G | SSRP RNA | A | 19 | G | 20 | C | 21 | * | G | 78 | G | 79 | U | 81 | cWW | cWH | cWW | |
37 | IL_3R1C_025 | 3R1C | 0.5335 | 0 | V+Z | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW | |
38 | IL_2XXA_004 | 2XXA | 0.5303 | 1 | F | SSRP RNA | A | 19 | G | 20 | C | 21 | * | G | 78 | G | 79 | U | 81 | cWW | ncWH | cWW | |
39 | IL_3R1D_002 | 3R1D | 0.5544 | 0 | Isolated cWH basepair | B+A | RNA (11-mer) | C | 5 | G | 6 | G | 7 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW |
40 | IL_2ZJR_029 | 2ZJR | 0.5526 | 0 | Isolated near basepair (H) | X | LSU rRNA | A | 883 | C | 884 | A | 885 | * | U | 917 | A | 918 | U | 919 | cWW | cWW | |
41 | IL_3R1C_003 | 3R1C | 0.5572 | 0 | d+c | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cWH | cWW | |
42 | IL_3R1C_024 | 3R1C | 0.5182 | 0 | W+X | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cWH | cWW | |
43 | IL_3R1D_005 | 3R1D | 0.5564 | 0 | C+D | RNA (11-mer) | C | 5 | G | 6||A | G | 7 | * | C | 5 | G | 6||A | G | 7||A | cWH | cWW | ||
44 | IL_406D_002 | 406D | 0.5526 | 0 | Isolated cWH basepair | A+E | RNA (17-mer) | U | 8||A | G | 9||A | G | 10||A | * | U | 25||A | G | 26||A | G | 27||A | cWW | ncWH | cWW |
45 | IL_2Y9B_007 | 2Y9B | 0.5414 | 0 | Y | HOMO SAPIENS U4A SNRNA | U | 825 | U | 826 | G | 827 | * | C | 802 | C | 803 | G | 804 | cWW | ncWW | cWW | |
46 | IL_3R1C_008 | 3R1C | 0.6055 | 0 | g+h | RNA (8-mer) | C | 5||A | G | 6||A | G | 7 | * | C | 2 | G | 3||A | G | 4 | cWW | cWH | cWW | |
47 | IL_3NJ7_006 | 3NJ7 | 0.8918 | 0 | F+E | RNA (10-mer) | C | 3 | A | 4 | G | 5 | * | C | 6 | A | 7 | G | 8 | cWW | cWW | ||
48 | IL_3R1C_023 | 3R1C | 0.8563 | 0 | X+W | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cWH | cWW | |
49 | IL_3NJ7_001 | 3NJ7 | 0.8909 | 0 | B+A | RNA (10-mer) | C | 6 | A | 7 | G | 8 | * | C | 3 | A | 4 | G | 5 | cWW | cWW | ||
50 | IL_3NJ7_004 | 3NJ7 | 0.8942 | 0 | Isolated near basepair | C+D | RNA (10-mer) | C | 6 | A | 7 | G | 8 | * | C | 3 | A | 4 | G | 5 | cWW | cWW | |
51 | IL_3U5H_072 | 3U5H | 0.8989 | 2 | 5 | 25S rRNA | U | 1818 | U | 1819 | C | 1822 | * | G | 1623 | G | 1624 | A | 1625 | cWW | ncWW | cWW | |
52 | IL_3R1C_022 | 3R1C | 0.8465 | 0 | U+T | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW | |
53 | IL_3R1C_015 | 3R1C | 0.7805 | 0 | O+P | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW | |
54 | IL_3U5F_023 | 3U5F | 0.8772 | 0 | 6 | 18S rRNA | C | 411 | A | 412 | U | 413 | * | A | 420 | A | 421 | G | 422 | cWW | cWW | ||
55 | IL_3NJ7_003 | 3NJ7 | 0.9107 | 0 | Isolated near basepair | D+C | RNA (10-mer) | C | 6 | A | 7 | G | 8 | * | C | 3 | A | 4 | G | 5 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGG*CGG | 31 |
CAG*CAG | 4 |
UGA*UGA | 3 |
GUA*UAAUAAGC | 3 |
AAU*AGU | 2 |
AGC*GGGU | 2 |
CGA*UGG | 1 |
CCA*UGG | 1 |
UCGA*UAA | 1 |
UAC*GGA | 1 |
GGG*CGC | 1 |
ACA*UAU | 1 |
UGG*UGG | 1 |
UUG*CCG | 1 |
UUUUC*GGA | 1 |
CAU*AAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
G*G | 37 |
A*A | 5 |
U*AAUAAG | 3 |
A*G | 3 |
G*GG | 2 |
C*G | 1 |
CG*A | 1 |
C*A | 1 |
U*C | 1 |
UUU*G | 1 |
Release history
Release | 0.6 |
---|---|
Date | 2012-04-02 |
Status | New id, 2 parents |
Parent motifs
Children motifs
Child motif | Common motif instances | Only in IL_11616.1 | Only in the child motif |
---|---|---|---|
IL_06390.1 Compare | IL_420D_002, IL_420D_001, IL_2AW7_011, IL_1GID_006, IL_406D_002, IL_3U5F_044, IL_3R1D_002, IL_1GID_013, IL_3U5F_023, IL_3U5F_022, IL_3NJ7_001, IL_2ZJR_029, IL_1X8W_005, IL_3U5H_072, IL_3U5F_070, IL_3SJ2_002, IL_3SJ2_003, IL_3SJ2_001, IL_3U5H_151, IL_3CZW_002, IL_3CZW_001, IL_2R22_001, IL_2XXA_011 | IL_3R1C_007, IL_3R1C_006, IL_3R1C_005, IL_3R1C_004, IL_3R1C_003, IL_3R1C_002, IL_3R1C_001, IL_3R1C_009, IL_3R1C_008, IL_2Y9B_007, IL_3R1D_005, IL_2XXA_004, IL_3R1C_014, IL_3R1C_015, IL_3R1C_016, IL_3R1C_017, IL_3R1C_010, IL_3R1C_011, IL_3R1C_012, IL_3R1C_013, IL_3NJ7_003, IL_3R1C_018, IL_3R1C_019, IL_3NJ7_004, IL_3NJ7_006, IL_3R1C_021, IL_3R1C_020, IL_3R1C_023, IL_3R1C_022, IL_3R1C_025, IL_3R1C_024, IL_3R1C_026 | IL_3V2F_025, IL_4E5C_001 |
- Annotations
-
- (41)
- Isolated cWH basepair (11)
- Isolated near basepair (2)
- Isolated near basepair (H) (1)
- Basepair signature
- 06_cWW-cWH-cWW
- Heat map statistics
- Min 0.02 | Avg 0.38 | Max 1.14
Coloring options: