Motif IL_07672.1 Version IL_07672.1 of this group appears in releases 0.3 to 0.3
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3FTM_002 | 3FTM | 0.4091 | 0 | UAA/GAN variation | D+C | RNA (12-mer) | C | -1 | G | 1 | G | 2 | A | 3 | A | 4 | * | U | 46 | G | 47 | A | 48 | G | 49 | cWW | ntSH | cWW | ||
| 2 | IL_1FJG_061 | 1FJG | 0.0000 | 0 | UAA/GAN variation (H) | A | SSU rRNA | C | 1431 | G | 1432 | A | 1433 | A | 1434 | G | 1435 | * | C | 1466 | G | 1467 | A | 1468 | G | 1469 | cWW | tSH | tHS | cWW | |
| 3 | IL_2ZY6_001 | 2ZY6 | 0.2907 | 0 | tSH-tHW | A | phenylalanyl transfer RNA | C | 25 | G | 26 | A | 27 | G | 28 | U | 29 | * | A | 7 | U | 8 | A | 9 | G | 10 | cWW | ntSH | tHW | cWW | |
| 4 | IL_3FS0_001 | 3FS0 | 0.8550 | 0 | UAA/GAN related | B+A | RNA (11-mer) | C | -1 | G | 1 | G | 2 | A | 3 | A | 4 | * | U | 46 | G | 47 | A | 48 | G | 49 | cWW | tSH | ntHh | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGAA*UGAG | 2 |
| CGAAG*CGAG | 1 |
| CGAGU*AUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGA*GA | 2 |
| GAA*GA | 1 |
| GAG*UA | 1 |
Release history
| Release | 0.3 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_07672.1 | Only in the parent motif |
|---|---|---|---|
| IL_64979.1 Compare | IL_1FJG_061, IL_2ZY6_001 | IL_3FTM_002, IL_3FS0_001 | |
| IL_29996.2 Compare | IL_3FTM_002, IL_3FS0_001 | IL_1FJG_061, IL_2ZY6_001 | IL_3LOA_001, IL_3BNQ_008, IL_1GID_010, IL_429D_002, IL_2O3V_002, IL_3BNT_005, IL_3BNT_002, IL_3G78_010, IL_3FTM_001, IL_3BNQ_002, IL_1GID_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_07672.1 | Only in the child motif |
|---|---|---|---|
| IL_90126.1 Compare | IL_2ZY6_001, IL_1FJG_061, IL_3FTM_002, IL_3FS0_001 | IL_3F1H_057, IL_3FTM_001 |
- Annotations
-
- UAA/GAN variation (H) (1)
- tSH-tHW (1)
- UAA/GAN related (1)
- UAA/GAN variation (1)
- Basepair signature
- Heat map statistics
- Min 0.29 | Avg 0.47 | Max 0.89
Coloring options: