Motif IL_08296.4 Version IL_08296.4 of this group appears in releases 3.87 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-3 | 4-7 | 5-6 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_5J7L_348 | 5J7L | 0.1056 | 2 | DA | LSU rRNA | G | 2718 | G | 2719 | U | 2720 | A | 2721 | G | 2722 | * | U | 2687 | G | 2688 | C | 2691 | cWW | tHS | cWW | |
2 | IL_4WF9_102 | 4WF9 | 0.0000 | 2 | X | LSU rRNA | G | 2745 | G | 2746 | U | 2747 | A | 2748 | G | 2749 | * | U | 2714 | G | 2715 | C | 2718 | cWW | tHS | cWW | |
3 | IL_8VTW_104 | 8VTW | 0.0975 | 2 | 1A | LSU rRNA | G | 2718 | G | 2719 | U | 2720 | A | 2721 | G | 2722 | * | U | 2687 | U | 2688 | C | 2691 | cWW | tHS | cWW | |
4 | IL_7A0S_096 | 7A0S | 0.1533 | 2 | X | LSU rRNA | G | 2698 | G | 2699 | U | 2700 | A | 2701 | G | 2702 | * | U | 2666 | C | 2667 | C | 2670 | cWW | ncSH | ntHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGUAG*UGUUC | 1 |
GGUAG*UGUAC | 1 |
GGUAG*UUUCC | 1 |
GGUAG*UCUCC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUA*GUU | 1 |
GUA*GUA | 1 |
GUA*UUC | 1 |
GUA*CUC | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-tHS-L-cWW
- Heat map statistics
- Min 0.10 | Avg 0.10 | Max 0.18
Coloring options: