IL_09061.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6	1-6	2-3	2-4	2-5	3-6	4-5
1	IL_1U9S_005	1U9S	0.5205	0	Minor groove platform, major groove intercalation	A	RIBONUCLEASE P	C	136	A	137	G	138	C	139	*	G	161	G	162	cWW				ntHS	cWW
2	IL_4IOA_068	4IOA	0.3345	0	Major groove minor groove platform; mini C-loop (H)	X	LSU rRNA	G	1838	A	1839	A	1840	G	1841	*	C	1876	C	1877	cWW		ncSH		ntHS	ncWW
3	IL_5J7L_357	5J7L	0.2653	0	Major groove minor groove platform; mini C-loop	DB	5S rRNA	G	51	A	52	A	53	G	54	*	C	30	C	31	cWW	ncSH	ncSH	ncWB	cWS	cWW
4	IL_5FDV_113	5FDV	0.2430	0	Major groove minor groove platform; mini C-loop (H)	1B	5S rRNA	G	51	A	52	A	53	G	54	*	C	30	C	31	cWW	cSH		ncWB	cWS	cWW
5	IL_4V9F_103	4V9F	0.2456	0	Major groove minor groove platform; mini C-loop	9	5S rRNA	G	50	A	51	A	52	G	53	*	C	29	C	30	cWW	cSH		ncWB	cWS	cWW
6	IL_5J7L_316	5J7L	0.2094	0	Major groove minor groove platform; mini C-loop	DA	LSU rRNA	G	1846	A	1847	A	1848	G	1849	*	C	1893	C	1894	cWW	ncSH		ncWB	ncWS	cWW
7	IL_1I6U_002	1I6U	0.0000	0	Major groove minor groove platform; mini C-loop	C	16S RRNA FRAGMENT	A	24	U	25	A	26	C	27	*	G	12	U	13	cWW	cSH	ncSH		ncWS	cWW
8	IL_4LFB_025	4LFB	0.0923	0	Major groove minor groove platform; mini C-loop	A	SSU rRNA	A	640	U	641	A	642	C	643	*	G	597	U	598	cWW	ncSH	ncSH		ncWS	cWW
9	IL_4PDB_002	4PDB	0.0890	0	Major groove minor groove platform; mini C-loop	I	SELEX RNA aptamer	A	24	U	25	A	26	U	27	*	A	14	U	15	cWW	ncSH			ncWS	cWW
10	IL_5J7L_029	5J7L	0.0977	0	Major groove minor groove platform; mini C-loop	AA	SSU rRNA	A	640	U	641	A	642	C	643	*	G	597	U	598	cWW	cSH	ncSH		ncWS	cWW
11	IL_1S03_007	1S03	0.0955	0	Major groove minor groove platform; mini C-loop	B	47-MER	A	12	A	13	A	14	C	15	*	G	37	U	38	cWW	cSH	ncSH	ntWH	ncWS	cWW
12	IL_1S03_003	1S03	0.0908	0	Major groove minor groove platform; mini C-loop	A	47-MER	A	12	A	13	A	14	C	15	*	G	37	U	38	cWW	cSH	ncSH	ntWH	ncWS	cWW
13	IL_4V88_423	4V88	0.1765	0	Major groove minor groove platform; mini C-loop	A6	SSU rRNA	G	802	A	803	A	804	U	805	*	A	746	C	747	cWW	cSH				cWW
14	IL_6CZR_137	6CZR	0.2077	0	Major groove minor groove platform; mini C-loop	1a	SSU rRNA	A	624	U	625	A	626	C	627	*	G	581	U	582	ncWW		ncSH			cWW
15	IL_4LFB_015	4LFB	0.3591	1	C-loop	A	SSU rRNA	G	371	C	372	A	374	U	375	*	A	389	C	390	cWW			ntWH	cWS	cWW
16	IL_6CZR_127	6CZR	0.4285	1	C-loop	1a	SSU rRNA	G	367	C	368	A	370	U	371	*	A	385	C	386	cWW			tWH	cWS	cWW
17	IL_4V9F_068	4V9F	0.4248	0	Major groove minor groove platform; mini C-loop	0	LSU rRNA	G	1902	U	1903	A	1904	U	1905	*	A	1934	C	1935	cWW					cWW
18	IL_5TBW_040	5TBW	0.4849	4	C-loop	1	LSU rRNA	G	999	C	1000	A	1003	U	1004	*	A	1046	C	1049	cWW			tWH	cWS	cWW
19	IL_5J7L_272	5J7L	0.4471	3	C-loop	DA	LSU rRNA	G	864	C	865	C	867	U	868	*	A	909	C	912	cWW	cSH		tWH	cWS	cWW
20	IL_4V9F_051	4V9F	0.4571	2	C-loop	0	LSU rRNA	G	1425	C	1426	C	1428	U	1429	*	A	1437	C	1439	cWW	cSH		tWH	cWS	cWW
21	IL_4Y4O_227	4Y4O	0.4436	2	C-loop	2A	LSU rRNA	G	1319	C	1320	A	1322	U	1323	*	A	1331	C	1333	cWW			tWH	cWS	cWW
22	IL_4IOA_049	4IOA	0.5321	2	C-loop	X	LSU rRNA	G	1332	G	1333	A	1335	G	1336	*	C	1344	C	1346	cWW				cWS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAG*CC	5
AUAC*GU	4
AAAC*GU	2
GCAAU*AC	2
CAGC*GG	1
AUAU*AU	1
GAAU*AC	1
GUAU*AC	1
GCGAAU*AAAC	1
GCACU*AAAC	1
GCACU*AGC	1
GCAAU*AGC	1
GGAAG*CGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*	8
UA*	6
CAA*	2
AG*	1
CGAA*AA	1
CAC*AA	1
CAC*G	1
CAA*G	1
GAA*G	1

Release history

Release	3.18	3.19	3.20	3.21	3.22	3.23	3.24
Date	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16
Status	New id, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_09061.1 Version IL_09061.1 of this group appears in releases 3.18 to 3.24 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_09061.1 Version IL_09061.1 of this group appears in releases 3.18 to 3.24

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Csv

Json