Motif IL_09061.2 Version IL_09061.2 of this group appears in releases 3.25 to 3.47

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2	break		3		4		5		6	1-4	1-6	2-3	2-5	4-5	4-6
1	IL_1U9S_004	1U9S	0.6048	0	Major groove minor groove platform; mini C-loop	A	RNase P class A	C	133	G	134	*	C	164	A	165	A	166	G	167	ncBW	cWW	cWW			cSH
2	IL_5J7L_357	5J7L	0.2657	0	Major groove minor groove platform; mini C-loop	DB	5S rRNA	C	30	C	31	*	G	51	A	52	A	53	G	54	ncBW	cWW	cWW	cSW	ncSH	ncSH
3	IL_5FDV_113	5FDV	0.2384	0	Major groove minor groove platform; mini C-loop (H)	1B	5S rRNA	C	30	C	31	*	G	51	A	52	A	53	G	54	ncBW	cWW	cWW	cSW	cSH
4	IL_4V9F_103	4V9F	0.2434	0	Major groove minor groove platform; mini C-loop	9	5S rRNA	C	29	C	30	*	G	50	A	51	A	52	G	53	ncBW	cWW	cWW	cSW	cSH
5	IL_4V88_423	4V88	0.1607	0	Major groove minor groove platform; mini C-loop	A6	SSU rRNA	A	746	C	747	*	G	802	A	803	A	804	U	805		cWW	cWW		cSH
6	IL_1S03_003	1S03	0.0000	0	Major groove minor groove platform; mini C-loop	A	47-MER	G	37	U	38	*	A	12	A	13	A	14	C	15	ntHW	cWW	cWW	ncSW	cSH	ncSH
7	IL_1S03_007	1S03	0.0282	0	Major groove minor groove platform; mini C-loop	B	47-MER	G	37	U	38	*	A	12	A	13	A	14	C	15	ntHW	cWW	cWW	ncSW	cSH	ncSH
8	IL_5J7L_029	5J7L	0.0791	0	Major groove minor groove platform; mini C-loop	AA	SSU rRNA	G	597	U	598	*	A	640	U	641	A	642	C	643		cWW	cWW	ncSW	cSH	ncSH
9	IL_4PDB_002	4PDB	0.0763	0	Major groove minor groove platform; mini C-loop	I	SELEX RNA aptamer	A	14	U	15	*	A	24	U	25	A	26	U	27		cWW	cWW	ncSW	ncSH
10	IL_4LFB_025	4LFB	0.0835	0	Major groove minor groove platform; mini C-loop	A	SSU rRNA	G	597	U	598	*	A	640	U	641	A	642	C	643		cWW	cWW	ncSW	ncSH	ncSH
11	IL_1I6U_002	1I6U	0.0908	0	Major groove minor groove platform; mini C-loop	C	16S RRNA FRAGMENT	G	12	U	13	*	A	24	U	25	A	26	C	27		cWW	cWW	ncSW	cSH	ncSH
12	IL_6CZR_137	6CZR	0.2362	0	Major groove minor groove platform; mini C-loop	1a	SSU rRNA	G	581	U	582	*	A	624	U	625	A	626	C	627		cWW	ncWW			ncSH
13	IL_5J7L_316	5J7L	0.2446	0	Major groove minor groove platform; mini C-loop	DA	LSU rRNA	C	1893	C	1894	*	G	1846	A	1847	A	1848	G	1849	ncBW	cWW	cWW	ncSW	ncSH
14	IL_4IOA_068	4IOA	0.3234	0	Major groove minor groove platform; mini C-loop (H)	X	LSU rRNA	C	1876	C	1877	*	G	1838	A	1839	A	1840	G	1841		ncWW	cWW	ntSH		ncSH
15	IL_4V9F_068	4V9F	0.4380	0	Major groove minor groove platform; mini C-loop	0	LSU rRNA	A	1934	C	1935	*	G	1902	U	1903	A	1904	U	1905		cWW	cWW
16	IL_1U9S_002	1U9S	0.5649	1	Major groove intercalation	A	RNase P class A	C	228	C	229	*	G	111	A	112	A	114	G	115		cWW	cWW
17	IL_1U9S_005	1U9S	0.5210	0	Minor groove platform, major groove intercalation	A	RNase P class A	G	161	G	162	*	C	136	A	137	G	138	C	139		cWW	cWW	ntSH
18	IL_3TZR_001	3TZR	0.6248	3	Major groove intercalation	B+A	RNA (16-mer)	G	110	C	111	*	G	52	A	53	A	57	C	58		cWW	cWW	ncSW

3D structures

Complete motif including flanking bases

Sequence	Counts
CC*GAAG	5
GU*AUAC	4
GU*AAAC	2
CG*CAAG	1
AC*GAAU	1
AU*AUAU	1
AC*GUAU	1
CC*GAAAG	1
GG*CAGC	1
GC*GAACUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
*AA	9
*UA	6
*AAA	1
*AG	1
*AACUA	1

Release history

Release	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47
Date	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove minor groove platform; mini C-loop (13)
Major groove intercalation (2)
Major groove minor groove platform; mini C-loop (H) (2)
Minor groove platform, major groove intercalation (1)
Basepair signature: cWW-cSW-cWW
Heat map statistics: Min 0.03 | Avg 0.37 | Max 0.91

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Coloring options: Nucleotide numbers

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