Motif IL_09061.3 Version IL_09061.3 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4		5		6	1-4	1-6	2-3	2-5	4-5	4-6
1	IL_1U9S_004	1U9S	0.6048	0	Major groove minor groove platform; mini C-loop	A	RIBONUCLEASE P	C	133	G	134	*	C	164	A	165	A	166	G	167	ncBW	cWW	cWW			cSH
2	IL_5J7L_357	5J7L	0.2657	0	Major groove minor groove platform; mini C-loop	DB	5S rRNA	C	30	C	31	*	G	51	A	52	A	53	G	54	ncBW	cWW	cWW	cSW	ncSH	ncSH
3	IL_5FDV_113	5FDV	0.2384	0	Major groove minor groove platform; mini C-loop (H)	1B	5S rRNA	C	30	C	31	*	G	51	A	52	A	53	G	54	ncBW	cWW	cWW	cSW	cSH
4	IL_4V9F_103	4V9F	0.2434	0	Major groove minor groove platform; mini C-loop	9	5S rRNA	C	29	C	30	*	G	50	A	51	A	52	G	53	ncBW	cWW	cWW	cSW	cSH
5	IL_5J7L_316	5J7L	0.2446	0	Major groove minor groove platform; mini C-loop	DA	LSU rRNA	C	1893	C	1894	*	G	1846	A	1847	A	1848	G	1849	ncBW	cWW	cWW	ncSW	ncSH
6	IL_1I6U_002	1I6U	0.0908	0	Major groove minor groove platform; mini C-loop	C	16S RRNA FRAGMENT	G	12	U	13	*	A	24	U	25	A	26	C	27		cWW	cWW	ncSW	cSH	ncSH
7	IL_4LFB_025	4LFB	0.0835	0	Major groove minor groove platform; mini C-loop	A	SSU rRNA	G	597	U	598	*	A	640	U	641	A	642	C	643		cWW	cWW	ncSW	ncSH	ncSH
8	IL_4PDB_002	4PDB	0.0763	0	Major groove minor groove platform; mini C-loop	I	SELEX RNA aptamer	A	14	U	15	*	A	24	U	25	A	26	U	27		cWW	cWW	ncSW	ncSH
9	IL_5J7L_029	5J7L	0.0791	0	Major groove minor groove platform; mini C-loop	AA	SSU rRNA	G	597	U	598	*	A	640	U	641	A	642	C	643		cWW	cWW	ncSW	cSH	ncSH
10	IL_1S03_007	1S03	0.0282	0	Major groove minor groove platform; mini C-loop	B	47-MER	G	37	U	38	*	A	12	A	13	A	14	C	15	ntHW	cWW	cWW	ncSW	cSH	ncSH
11	IL_1S03_003	1S03	0.0000	0	Major groove minor groove platform; mini C-loop	A	47-MER	G	37	U	38	*	A	12	A	13	A	14	C	15	ntHW	cWW	cWW	ncSW	cSH	ncSH
12	IL_4V88_423	4V88	0.1607	0	Major groove minor groove platform; mini C-loop	A6	SSU rRNA	A	746	C	747	*	G	802	A	803	A	804	U	805		cWW	cWW		cSH
13	IL_6CZR_137	6CZR	0.2362	0	Major groove minor groove platform; mini C-loop	1a	SSU rRNA	G	581	U	582	*	A	624	U	625	A	626	C	627		cWW	ncWW			ncSH
14	IL_4V9F_068	4V9F	0.4380	0	Major groove minor groove platform; mini C-loop	0	LSU rRNA	A	1934	C	1935	*	G	1902	U	1903	A	1904	U	1905		cWW	cWW
15	IL_7A0S_068	7A0S	0.5055	0	Major groove minor groove platform; mini C-loop	X	LSU rRNA	C	1876	C	1877	*	G	1838	A	1839	A	1840	G	1841		cWW	cWW	ncSW
16	IL_1U9S_005	1U9S	0.5210	0	Minor groove platform, major groove intercalation	A	RIBONUCLEASE P	G	161	G	162	*	C	136	A	137	G	138	C	139		cWW	cWW	ntSH
17	IL_1U9S_002	1U9S	0.5649	1	Major groove intercalation	A	RIBONUCLEASE P	C	228	C	229	*	G	111	A	112	A	114	G	115		cWW	cWW
18	IL_3TZR_001	3TZR	0.6248	3	Major groove intercalation	B+A	RNA (16-mer)	G	110	C	111	*	G	52	A	53	A	57	C	58		cWW	cWW	ncSW

3D structures

Complete motif including flanking bases

Sequence	Counts
CC*GAAG	5
GU*AUAC	4
GU*AAAC	2
CG*CAAG	1
AU*AUAU	1
AC*GAAU	1
AC*GUAU	1
GG*CAGC	1
CC*GAAAG	1
GC*GAACUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
*AA	9
*UA	6
*AG	1
*AAA	1
*AACUA	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove minor groove platform; mini C-loop (14)
Major groove intercalation (2)
Minor groove platform, major groove intercalation (1)
Major groove minor groove platform; mini C-loop (H) (1)
Basepair signature: cWW-cSW-cWW
Heat map statistics: Min 0.03 | Avg 0.39 | Max 0.91

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Coloring options: Nucleotide numbers

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