Motif IL_97296.1 Version IL_97296.1 of this group appears in releases 1.10 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_017 | 3U5F | 0.8982 | 0 | 6 | 18S rRNA | C | 270 | A | 271 | U | 272 | G | 273 | * | U | 283 | G | 284 | G | 285 | cWW | cWW | ||
| 2 | IL_3V2F_105 | 3V2F | 0.4295 | 2 | A | 23S Ribosomal RNA | G | 2843 | G | 2844 | G | 2845 | G | 2846 | * | C | 2870 | C | 2871 | C | 2874 | cWW | cWS | cWW | |
| 3 | IL_2O3V_003 | 2O3V | 0.0000 | 2 | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | G | 19 | cWW | cWS | cWW | |
| 4 | IL_3MEI_004 | 3MEI | 0.1428 | 2 | B+A | RNA (23-mer) | C | 7 | G | 8 | C | 9 | C | 10 | * | G | 13 | C | 15 | G | 17 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUG*UGG | 1 |
| GGGG*CCGAC | 1 |
| CGCU*AAAAG | 1 |
| CGCC*GCCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*G | 1 |
| GG*CGA | 1 |
| GC*AAA | 1 |
| GC*CCU | 1 |
Release history
| Release | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|
| Date | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_97296.1 | Only in the parent motif |
|---|---|---|---|
| IL_71288.1 Compare | IL_3MEI_004, IL_2O3V_003, IL_3V2F_105 | IL_3U5F_017 | IL_429D_002, IL_1NUV_003 |
| IL_09520.3 Compare | IL_3U5F_017 | IL_3MEI_004, IL_2O3V_003, IL_3V2F_105 | IL_2FQN_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_97296.1 | Only in the child motif |
|---|---|---|---|
| IL_55214.1 Compare | IL_3MEI_004, IL_2O3V_003 | IL_3U5F_017, IL_3V2F_105 | IL_1VW3_056, IL_1S72_053, IL_4KR6_002, IL_1VW3_022, IL_4NVV_035, IL_1VW3_029 |
| IL_69106.2 Compare | IL_3U5F_017 | IL_3MEI_004, IL_2O3V_003, IL_3V2F_105 | IL_2FQN_002, IL_4A1B_070 |
- Annotations
- Basepair signature
- cWW-L-cWS-cWW
- Heat map statistics
- Min 0.14 | Avg 0.47 | Max 0.95
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