Motif IL_08763.1 Version IL_08763.1 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1FJG_022 | 1FJG | 0.1021 | 5 | A | SSU rRNA | C | 569 | G | 575 | * | C | 880 | G | 881 | cWW | cWW | |
2 | IL_2AW7_029 | 2AW7 | 0.0000 | 5 | A | 16S ribosomal RNA | C | 569 | G | 575 | * | C | 880 | G | 881 | cWW | cWW | |
3 | IL_3U5H_046 | 3U5H | 0.5811 | 2 | 5 | 25S rRNA | U | 1015 | G | 1018 | * | U | 1034 | G | 1035 | cWW | cWW | |
4 | IL_2OZB_001 | 2OZB | 0.6937 | 1 | Single bulged A | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | U | 24 | G | 26 | * | C | 47 | G | 48 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGUAAAG*CG | 2 |
UCCG*UG | 1 |
UAG*CG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUAAA* | 2 |
CC* | 1 |
A* | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | New id, 2 parents |
Parent motifs
Parent motif | Common motif instances | Only in IL_08763.1 | Only in the parent motif |
---|---|---|---|
IL_25300.3 Compare | IL_2OZB_001, IL_3U5H_046 | IL_2AW7_029, IL_1FJG_022 | IL_1KXK_001, IL_4A1B_032, IL_3V2F_107, IL_4IOA_024, IL_2QBG_032 |
IL_47875.1 Compare | IL_2AW7_029, IL_1FJG_022 | IL_2OZB_001, IL_3U5H_046 | IL_3U5F_086 |
Children motifs
Child motif | Common motif instances | Only in IL_08763.1 | Only in the child motif |
---|---|---|---|
IL_09698.1 Compare | IL_2OZB_001, IL_3U5H_046 | IL_2AW7_029, IL_1FJG_022 | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 |
IL_04465.1 Compare | IL_2AW7_029, IL_1FJG_022 | IL_2OZB_001, IL_3U5H_046 | IL_2QBG_086, IL_4CUV_143, IL_4CUV_067, IL_1FJG_005, IL_4FAW_014, IL_2AW7_005, IL_2QBG_107, IL_1S72_045, IL_1S72_042, IL_3U5H_063, IL_2QBG_060, IL_3D0U_005, IL_4NVV_061, IL_1S72_022, IL_4NVV_107, IL_2NZ4_007, IL_4BPP_033, IL_4C7O_003, IL_4A1B_063, IL_4IOA_101, IL_3U5H_137, IL_1S72_099, IL_4CUV_108, IL_4IOA_024, IL_4CUX_033, IL_3U5F_033, IL_1U9S_006, IL_4NVV_034, IL_3U5H_019 |
- Annotations
-
- (3)
- Single bulged A (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.38 | Max 0.70
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