IL_09705.11

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8	1-8	2-7	3-6	4-5
1	IL_3DIL_002	3DIL	0.4391	0	Double sheared	A	RNA (174-MER)	C	70	G	71	A	72	G	73	*	C	19	G	20	A	21	G	22	cWW	tSH	tHS	cWW
2	IL_4V9F_100	4V9F	0.3734	0	Double sheared	0	LSU rRNA	C	2873	G	2874	A	2875	G	2876	*	C	2881	G	2882	A	2883	G	2884	cWW	tSH	tHS	cWW
3	IL_8C3A_141	8C3A	0.4765	0	Double sheared; A in syn	1	LSU rRNA	A	3307	G	3308	A	3309	G	3310	*	C	3325	G	3326	A	3327	U	3328	cWW			cWW
4	IL_5TBW_135	5TBW	0.5189	0	Double sheared; A in syn	1	LSU rRNA	A	3342	G	3343	A	3344	G	3345	*	C	3360	G	3361	A	3362	U	3363	cWW		ntSs	cWW
5	IL_6CZR_169	6CZR	0.4077	0	Double sheared	1a	SSU rRNA	G	1399	G	1400	A	1401	G	1402	*	U	1459	G	1460	A	1461	C	1462	cWW	tSH	tHS	cWW
6	IL_5J7L_062	5J7L	0.3937	0	Double sheared	AA	SSU rRNA	G	1416	G	1417	A	1418	G	1419	*	U	1481	G	1482	A	1483	C	1484	cWW	tSH	tHS	cWW
7	IL_4V88_468	4V88	0.2701	0	Double sheared	A6	SSU rRNA	C	1653	G	1654	A	1655	U	1656	*	A	1744	G	1745	A	1746	G	1747	cWW	tSH	tHS	cWW
8	IL_8C3A_475	8C3A	0.2525	0	Double sheared	CM	SSU rRNA	C	1640	G	1641	A	1642	U	1643	*	A	1731	G	1732	A	1733	G	1734	cWW	tSH	tHS	cWW
9	IL_4LFB_060	4LFB	0.1631	0	Double sheared	A	SSU rRNA	U	1481	G	1482	A	1483	C	1484	*	G	1416	G	1417	A	1418	G	1419	cWW	tSH	tHS	cWW
10	IL_4KZD_002	4KZD	0.2087	0	Double sheared	R	RNA (84-MER)	U	71	A	72	A	73	C	74	*	G	11	A	12	A	13	A	14	cWW	tSH	tHS	cWW
11	IL_4XWF_001	4XWF	0.0000	0	Double sheared	A	ZMP/ZTP riboswitch	U	7	G	8	A	9	C	10	*	G	36	G	37	A	38	G	39	cWW	tSH	tHS	cWW
12	IL_5BTP_004	5BTP	0.0839	0	Double sheared	B	ZMP/ZTP riboswitch	U	12	G	13	A	14	C	15	*	G	41	A	42	A	43	G	44	cWW	tSH	tHS	cWW
13	IL_6WZR_001	6WZR	0.1210	0	Double sheared	A	ZMP/ZTP riboswitch	U	12	G	13	A	14	C	15	*	G	41	A	42	A	43	G	44	cWW	tSH	tHS	cWW
14	IL_3D0U_002	3D0U	0.1892	0	Double sheared	A	Lysine Riboswitch RNA	C	67	G	68	A	69	G	70	*	C	16	G	17	A	18	G	19	cWW	tSH	tHS	cWW
15	IL_1SA9_002	1SA9	0.1936	0	Double sheared	D+C	RNA (8-mer)	C	211	G	212	A	213	G	214	*	C	203	G	204	A	205	G	206	cWW	ntSH	tHS	cWW
16	IL_5AOX_003	5AOX	0.2134	0	Double sheared	C	ALU JO CONSENSUS RNA	A	105	G	106	A	107	C	108	*	G	58	G	59	A	60	U	61	cWW	tSH	tHS	cWW
17	IL_4V88_471	4V88	0.2937	0	Double sheared	A6	SSU rRNA	U	1669	G	1670	A	1671	G	1672	*	C	1729	A	1730	A	1731	A	1732	cWW	tSH	tHS	cWW
18	IL_8C3A_478	8C3A	0.3202	0	Double sheared	CM	SSU rRNA	U	1656	G	1657	A	1658	G	1659	*	C	1716	A	1717	A	1718	A	1719	cWW	tSH	tHS	cWW
19	IL_4ZNP_002	4ZNP	0.2344	0	Double sheared	A	ZMP/ZTP riboswitch	G	9	G	10	A	11	C	12	*	G	37	G	38	A	39	C	40	cWW	tSH	tHS	cWW
20	IL_4V88_396	4V88	0.2168	0	Double sheared	A6	SSU rRNA	C	186	G	187	A	188	C	189	*	G	196	A	197	A	198	G	199	cWW	tSH	tHS	cWW
21	IL_7A0S_081	7A0S	0.2353	0	Double sheared	X	LSU rRNA	C	2329	G	2330	A	2331	G	2332	*	C	2343	G	2344	A	2345	G	2346	cWW	tSH	ntHS	cWW
22	IL_4WF9_087	4WF9	0.1521	0	Double sheared	X	LSU rRNA	C	2377	G	2378	A	2379	G	2380	*	C	2391	G	2392	A	2393	G	2394	cWW	tSH	tHS	cWW
23	IL_5J7L_333	5J7L	0.1502	0	Double sheared	DA	LSU rRNA	C	2350	G	2351	A	2352	G	2353	*	C	2364	G	2365	A	2366	G	2367	cWW	tSH	tHS	cWW
24	IL_8VTW_088	8VTW	0.1966	0	Double sheared	1A	LSU rRNA	C	2350	G	2351	A	2352	G	2353	*	C	2364	G	2365	A	2366	G	2367	cWW	tSH	tHS	cWW
25	IL_8C3A_404	8C3A	0.2385	0	Double sheared	CM	SSU rRNA	C	184	G	185	A	186	C	187	*	G	194	A	195	A	196	G	197	cWW	tSH	tHS	cWW
26	IL_1SAQ_002	1SAQ	0.2324	0	Double sheared	A+B	RNA (8-mer)	C	103	G	104	A	105	G	106	*	C	111	G	112	A	113	G	114	cWW	tSH	tHS	cWW
27	IL_5J7L_256	5J7L	0.2439	0	Double sheared	DA	LSU rRNA	U	554	G	555	A	556	C	557	*	G	536	G	537	A	538	G	539	cWW	tSH	tHS	cWW
28	IL_4WF9_016	4WF9	0.2316	0	Double sheared	X	LSU rRNA	U	597	G	598	A	599	U	600	*	A	581	G	582	A	583	G	584	cWW	tSH	tHS	cWW
29	IL_8T29_001	8T29	0.3401	0	Double sheared; A in syn	R	RNA (90-MER)	G	80	A	81	A	82	G	83	*	C	8	G	9	A	10	C	11	cWW	tSH	ntWS	cWW
30	IL_6YML_002	6YML	0.2901	0	Double sheared	A	Chains: A,C	C	12	A	13	A	14	C	15	*	G	24	G	25	C	26	G	27	cWW	tSH	ntHS	cWW
31	IL_6YL5_010	6YL5	0.2858	0	Double sheared	I	Chains: A,B,C,D,E,F,G,H,I,J,K,L	C	12	A	13	A	14	C	15	*	G	24	G	25	C	26	G	27	cWW	tSH	tHS	cWW
32	IL_8C3A_123	8C3A	0.3366	2	Double sheared	1	LSU rRNA	A	3111	G	3112	A	3113	G	3116	*	C	2976	A	2977	A	2978	U	2979	cWW	tSH	tHS	cWW
33	IL_5TBW_114	5TBW	0.3365	2	Double sheared	1	LSU rRNA	C	3004	A	3005	A	3006	U	3007	*	A	3139	G	3140	A	3141	G	3144	cWW	tSH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAG*CGAG	9
UGAC*GGAG	3
AGAG*CGAU	2
GGAG*UGAC	2
CGAU*AGAG	2
UGAC*GAAG	2
UGAG*CAAA	2
CGAC*GAAG	2
CAAC*GGCG	2
UAAC*GAAA	1
AGAC*GGAU	1
GGAC*GGAC	1
UGAU*AGAG	1
GAAG*CGAC	1
AGAACG*CAAU	1
CAAU*AGAACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GA*GA	21
GA*AA	6
AA*GC	2
AA*AA	1
AA*GA	1
GAAC*AA	1
AA*GAAC	1

Release history

Release	3.87
Date	2024-08-14
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_09705.11 Version IL_09705.11 of this group appears in releases 3.87 to 3.87 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_09705.11 Version IL_09705.11 of this group appears in releases 3.87 to 3.87

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