Motif IL_09705.3 Version IL_09705.3 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_327 | 5J7L | 0.6015 | 0 | Other IL | DA | LSU rRNA | C | 2103 | C | 2104 | U | 2105 | U | 2106 | * | A | 2183 | A | 2184 | U | 2185 | G | 2186 | cWW | ncWW | ntHS | ncWW |
| 2 | IL_5J7L_062 | 5J7L | 0.3949 | 0 | Double sheared | AA | SSU rRNA | U | 1481 | G | 1482 | A | 1483 | C | 1484 | * | G | 1416 | G | 1417 | A | 1418 | G | 1419 | cWW | tSH | tHS | cWW |
| 3 | IL_4V88_468 | 4V88 | 0.2538 | 0 | Double sheared | A6 | SSU rRNA | C | 1653 | G | 1654 | A | 1655 | U | 1656 | * | A | 1744 | G | 1745 | A | 1746 | G | 1747 | cWW | tSH | tHS | cWW |
| 4 | IL_3DIL_002 | 3DIL | 0.3460 | 0 | Double sheared | A | RNA (174-MER) | C | 70 | G | 71 | A | 72 | G | 73 | * | C | 19 | G | 20 | A | 21 | G | 22 | cWW | tSH | tHS | cWW |
| 5 | IL_4V9F_100 | 4V9F | 0.2945 | 0 | Double sheared | 0 | LSU rRNA | C | 2873 | G | 2874 | A | 2875 | G | 2876 | * | C | 2881 | G | 2882 | A | 2883 | G | 2884 | cWW | tSH | tHS | cWW |
| 6 | IL_4IOA_058 | 4IOA | 0.2017 | 0 | Double sheared | X | LSU rRNA | U | 1530 | C | 1531 | A | 1532 | G | 1533 | * | C | 1491 | A | 1492 | A | 1493 | G | 1494 | cWW | tHS | cWW | |
| 7 | IL_4WF9_087 | 4WF9 | 0.1147 | 0 | Double sheared | X | LSU rRNA | C | 2377 | G | 2378 | A | 2379 | G | 2380 | * | C | 2391 | G | 2392 | A | 2393 | G | 2394 | cWW | tSH | tHS | cWW |
| 8 | IL_5J7L_333 | 5J7L | 0.0000 | 0 | Double sheared | DA | LSU rRNA | C | 2350 | G | 2351 | A | 2352 | G | 2353 | * | C | 2364 | G | 2365 | A | 2366 | G | 2367 | cWW | tSH | tHS | cWW |
| 9 | IL_4Y4O_264 | 4Y4O | 0.0962 | 0 | Double sheared | 2A | LSU rRNA | C | 2350 | G | 2351 | A | 2352 | G | 2353 | * | C | 2364 | G | 2365 | A | 2366 | G | 2367 | cWW | tSH | tHS | cWW |
| 10 | IL_4IOA_083 | 4IOA | 0.1189 | 0 | Double sheared | X | LSU rRNA | C | 2329 | G | 2330 | A | 2331 | G | 2332 | * | C | 2343 | G | 2344 | A | 2345 | G | 2346 | cWW | tSH | tHS | cWW |
| 11 | IL_1SAQ_002 | 1SAQ | 0.1654 | 0 | Double sheared | A+B | RNA (8-mer) | C | 103 | G | 104 | A | 105 | G | 106 | * | C | 111 | G | 112 | A | 113 | G | 114 | cWW | tSH | tHS | cWW |
| 12 | IL_1SA9_002 | 1SA9 | 0.1859 | 0 | Double sheared | C+D | RNA (8-mer) | C | 203 | G | 204 | A | 205 | G | 206 | * | C | 211 | G | 212 | A | 213 | G | 214 | cWW | tSH | ntHS | cWW |
| 13 | IL_3D0U_002 | 3D0U | 0.2020 | 0 | Double sheared | A | Lysine Riboswitch RNA | C | 67 | G | 68 | A | 69 | G | 70 | * | C | 16 | G | 17 | A | 18 | G | 19 | cWW | tSH | tHS | cWW |
| 14 | IL_4KZD_002 | 4KZD | 0.2214 | 0 | Double sheared | R | RNA (84-MER) | U | 71 | A | 72 | A | 73 | C | 74 | * | G | 11 | A | 12 | A | 13 | A | 14 | cWW | tSH | tHS | cWW |
| 15 | IL_4LFB_060 | 4LFB | 0.1844 | 0 | Double sheared | A | SSU rRNA | U | 1481 | G | 1482 | A | 1483 | C | 1484 | * | G | 1416 | G | 1417 | A | 1418 | G | 1419 | cWW | tSH | tHS | cWW |
| 16 | IL_4XWF_001 | 4XWF | 0.2211 | 0 | Double sheared | A | ZMP/ZTP riboswitch | U | 7 | G | 8 | A | 9 | C | 10 | * | G | 36 | G | 37 | A | 38 | G | 39 | cWW | tSH | tHS | cWW |
| 17 | IL_5BTP_004 | 5BTP | 0.2261 | 0 | Double sheared | B | ZMP/ZTP riboswitch | U | 12 | G | 13 | A | 14 | C | 15 | * | G | 41 | A | 42 | A | 43 | G | 44 | cWW | tSH | tHS | cWW |
| 18 | IL_4WF9_016 | 4WF9 | 0.2367 | 0 | Double sheared | X | LSU rRNA | U | 597 | G | 598 | A | 599 | U | 600 | * | A | 581 | G | 582 | A | 583 | G | 584 | cWW | tSH | tHS | cWW |
| 19 | IL_5J7L_256 | 5J7L | 0.2479 | 0 | Double sheared | DA | LSU rRNA | U | 554 | G | 555 | A | 556 | C | 557 | * | G | 536 | G | 537 | A | 538 | G | 539 | cWW | tSH | tHS | cWW |
| 20 | IL_4V88_396 | 4V88 | 0.2896 | 0 | Double sheared | A6 | SSU rRNA | C | 186 | G | 187 | A | 188 | C | 189 | * | G | 196 | A | 197 | A | 198 | G | 199 | cWW | tSH | tHS | cWW |
| 21 | IL_4ZNP_002 | 4ZNP | 0.3679 | 0 | Double sheared | A | ZMP/ZTP riboswitch | G | 9 | G | 10 | A | 11 | C | 12 | * | G | 37 | G | 38 | A | 39 | C | 40 | cWW | tSH | tHS | cWW |
| 22 | IL_5AOX_003 | 5AOX | 0.2388 | 0 | Double sheared | C | ALU JO CONSENSUS RNA | A | 105 | G | 106 | A | 107 | C | 108 | * | G | 58 | G | 59 | A | 60 | U | 61 | cWW | tSH | tHS | cWW |
| 23 | IL_4V88_471 | 4V88 | 0.2994 | 0 | Double sheared | A6 | SSU rRNA | U | 1669 | G | 1670 | A | 1671 | G | 1672 | * | C | 1729 | A | 1730 | A | 1731 | A | 1732 | cWW | tSH | tHS | cWW |
| 24 | IL_5TBW_114 | 5TBW | 0.3462 | 2 | Double sheared | 1 | LSU rRNA | A | 3139 | G | 3140 | A | 3141 | G | 3144 | * | C | 3004 | A | 3005 | A | 3006 | U | 3007 | cWW | tSH | tHS | cWW |
| 25 | IL_4WF9_054 | 4WF9 | 0.6744 | 1 | Other IL | X | LSU rRNA | C | 1461 | G | 1462 | A | 1463 | G | 1465 | * | C | 1624 | U | 1625 | A | 1626 | G | 1627 | cWW | cWW | ||
| 26 | IL_6DME_001 | 6DME | 0.5843 | 2 | tSH-tHW | A | ppGpp Riboswitch | C | 40 | A | 41 | A | 42 | G | 45 | * | C | 11 | U | 12 | A | 13 | G | 14 | cWW | tSH | ntWW | cWW |
| 27 | IL_5TBW_135 | 5TBW | 0.6588 | 0 | Double sheared; A in syn | 1 | LSU rRNA | C | 3360 | G | 3361 | A | 3362 | U | 3363 | * | A | 3342 | G | 3343 | A | 3344 | G | 3345 | cWW | ntsS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAG*CGAG | 9 |
| UGAC*GGAG | 4 |
| CGAU*AGAG | 2 |
| CCUU*AAUG | 1 |
| UCAG*CAAG | 1 |
| UAAC*GAAA | 1 |
| UGAC*GAAG | 1 |
| UGAU*AGAG | 1 |
| CGAC*GAAG | 1 |
| GGAC*GGAC | 1 |
| AGAC*GGAU | 1 |
| UGAG*CAAA | 1 |
| AGAACG*CAAU | 1 |
| CGAUG*CUAG | 1 |
| CAAGCG*CUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*GA | 18 |
| GA*AA | 3 |
| CU*AU | 1 |
| CA*AA | 1 |
| AA*AA | 1 |
| GAAC*AA | 1 |
| GAU*UA | 1 |
| AAGC*UA | 1 |
- Annotations
-
- Double sheared (23)
- Other IL (2)
- Double sheared; A in syn (1)
- tSH-tHW (1)
- Basepair signature
- cWW-tSH-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.39 | Max 0.88
Coloring options: