Motif IL_79870.1 Version IL_79870.1 of this group appears in releases 1.0 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_029 | 4A1B | 0.0000 | 1 | 1 | 26S RRNA | G | 704 | A | 705 | U | 706 | A | 707 | G | 708 | * | C | 721 | G | 722 | C | 724 | C | 725 | cWW | tHW | tHS | cWW |
| 2 | IL_3V2F_026 | 3V2F | 0.9286 | 0 | A | 23S Ribosomal RNA | C | 846 | U | 847 | G | 848 | A | 849 | C | 850 | * | G | 927 | G | 928 | U | 930 | G | 931 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAG*CGUCC | 1 |
| CUGAC*GGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUA*GUC | 1 |
| UGA*GU | 1 |
Release history
| Release | 1.0 |
|---|---|
| Date | 2013-03-04 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_79870.1 | Only in the parent motif |
|---|---|---|---|
| IL_91547.1 Compare | IL_3V2F_026 | IL_4A1B_029 | IL_4A1B_097, IL_3V2F_043 |
| IL_58811.1 Compare | IL_4A1B_029 | IL_3V2F_026 | IL_4A1B_075 |
Children motifs
| Child motif | Common motif instances | Only in IL_79870.1 | Only in the child motif |
|---|---|---|---|
| IL_10647.1 Compare | IL_3V2F_026 | IL_4A1B_029 | IL_4A1B_097, IL_3V2F_043 |
| IL_49550.1 Compare | IL_4A1B_029 | IL_3V2F_026 | IL_4A1B_075 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Heat map statistics
- Min 0.93 | Avg 0.46 | Max 0.93
Coloring options: