Motif IL_12786.4 Version IL_12786.4 of this group appears in releases 3.17 to 3.17
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4WF9_018 | 4WF9 | 0.7934 | 0 | Isolated non-canonical cWW pair | X | LSU rRNA | U | 638 | U | 639 | G | 640 | * | U | 705 | U | 706 | G | 707 | cWW | cWW | |
2 | IL_2D6F_001 | 2D6F | 0.6553 | 0 | Self complementary | F | tRNA | C | 927 | U | 928 | G | 929 | * | C | 941 | G | 942 | G | 943 | cWW | ncWW | cWW |
3 | IL_406D_002 | 406D | 0.3467 | 0 | Isolated cWH basepair | A+E | RNA (17-mer) | U | 8||A | G | 9||A | G | 10||A | * | U | 25||A | G | 26||A | G | 27||A | cWW | ncWH | cWW |
4 | IL_4KQ0_001 | 4KQ0 | 0.1521 | 0 | Isolated cWH basepair | E+B | RNA (19-mer) | C | 15 | G | 16 | G | 17 | * | C | 3 | G | 4 | G | 5 | cWW | cWH | cWW |
5 | IL_4KQ0_005 | 4KQ0 | 0.1514 | 0 | Isolated cWH basepair | B+E | RNA (19-mer) | C | 15 | G | 16 | G | 17 | * | C | 3 | G | 4 | G | 5 | cWW | cWH | cWW |
6 | IL_6IA2_003 | 6IA2 | 0.1648 | 0 | Isolated cWH basepair | B+A | RNA (19-mer) | C | 9 | G | 10||A | G | 11||A | * | C | 9 | G | 10||A | G | 11 | cWW | cWH | cWW |
7 | IL_3R1D_002 | 3R1D | 0.1863 | 0 | Isolated cWH basepair | B+A | RNA (11-mer) | C | 5 | G | 6 | G | 7 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW |
8 | IL_4E5C_001 | 4E5C | 0.1595 | 0 | Isolated cWH basepair | A+B | RNA (19-mer) | C | 9 | G | 10 | G | 11 | * | C | 9 | G | 10 | G | 11 | cWW | cWH | cWW |
9 | IL_3R1C_031 | 3R1C | 0.1439 | 0 | Isolated cWH basepair | E+F | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW |
10 | IL_3R1C_017 | 3R1C | 0.1255 | 0 | Isolated cWH basepair | Q+R | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW |
11 | IL_3SJ2_002 | 3SJ2 | 0.1145 | 0 | Isolated cWH basepair | B+A | RNA (17-mer) | C | 10 | G | 11 | G | 12 | * | C | 10 | G | 11 | G | 12 | cWW | cWH | cWW |
12 | IL_3R1C_011 | 3R1C | 0.1116 | 0 | Isolated cWH basepair | L+K | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cWH | cWW |
13 | IL_3R1C_012 | 3R1C | 0.1136 | 0 | Isolated cWH basepair | K+L | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cWH | cWW |
14 | IL_3R1C_018 | 3R1C | 0.1181 | 0 | Isolated cWH basepair | R+Q | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cWH | cWW |
15 | IL_3SJ2_003 | 3SJ2 | 0.1040 | 0 | Isolated cWH basepair | A+B | RNA (19-mer) + RNA (17-mer) | C | 13 | G | 14 | G | 15 | * | C | 7 | G | 8 | G | 9 | cWW | cWH | cWW |
16 | IL_3SJ2_001 | 3SJ2 | 0.1130 | 0 | Isolated cWH basepair | B+A | RNA (17-mer) | C | 13 | G | 14 | G | 15 | * | C | 7 | G | 8 | G | 9 | cWW | cWH | cWW |
17 | IL_4KQ0_003 | 4KQ0 | 0.1410 | 0 | Isolated cWH basepair | E+B | RNA (19-mer) | C | 9 | G | 10 | G | 11 | * | C | 9 | G | 10 | G | 11 | cWW | cWH | cWW |
18 | IL_3R1C_032 | 3R1C | 0.1214 | 0 | Isolated cWH basepair | E+F | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cWH | cWW |
19 | IL_3CZW_002 | 3CZW | 0.0000 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 10 | G | 11 | A | 12 | * | U | 7||||2_555 | G | 8||||2_555 | A | 9||||2_555 | cWW | cWH | cWW |
20 | IL_3CZW_001 | 3CZW | 0.0000 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 10||||2_555 | G | 11||||2_555 | A | 12||||2_555 | * | U | 7 | G | 8 | A | 9 | cWW | cWH | cWW |
21 | IL_4KQ0_002 | 4KQ0 | 0.1292 | 0 | Isolated cWH basepair | E+B | RNA (19-mer) | C | 12 | G | 13 | G | 14 | * | C | 6 | G | 7 | G | 8 | cWW | cWH | cWW |
22 | IL_4KQ0_004 | 4KQ0 | 0.1294 | 0 | Isolated cWH basepair | B+E | RNA (19-mer) | C | 12 | G | 13 | G | 14 | * | C | 6 | G | 7 | G | 8 | cWW | cWH | cWW |
23 | IL_4V88_427 | 4V88 | 0.2602 | 0 | Isolated cWH basepair | A6 | SSU rRNA | C | 848 | C | 849 | A | 850 | * | U | 822 | G | 823 | G | 824 | cWW | ncWH | cWW |
24 | IL_4V88_453 | 4V88 | 0.2419 | 0 | Isolated cWH basepair | A6 | SSU rRNA | C | 1323 | G | 1324 | A | 1325 | * | U | 1290 | G | 1291 | G | 1292 | cWW | cWH | cWW |
25 | IL_4WF9_045 | 4WF9 | 0.2366 | 0 | Isolated cWH basepair | X | LSU rRNA | G | 1243 | G | 1244 | G | 1245 | * | C | 1277 | G | 1278 | C | 1279 | cWW | cWH | cWW |
26 | IL_5J7L_011 | 5J7L | 0.2291 | 0 | Isolated cWH basepair | AA | SSU rRNA | G | 144 | G | 145 | G | 146 | * | C | 176 | G | 177 | C | 178 | cWW | cWH | cWW |
27 | IL_3D0M_001 | 3D0M | 0.1779 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 10||||16_545 | G | 11||||16_545 | A | 12||||16_545 | * | U | 7 | G | 8 | A | 9 | ncWW | cWH | cWW |
28 | IL_3D0M_002 | 3D0M | 0.1779 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 10 | G | 11 | A | 12 | * | U | 7||||16_545 | G | 8||||16_545 | A | 9||||16_545 | ncWW | cWH | cWW |
29 | IL_2R8S_005 | 2R8S | 0.4468 | 5 | cWH basepair with bulged bases | R | P4-P6 RNA RIBOZYME DOMAIN | G | 134 | U | 135 | A | 136 | * | U | 182 | A | 187 | C | 189 | cWW | cWH | cWW |
30 | IL_6F4H_001 | 6F4H | 0.3445 | 0 | Isolated cWH basepair | D | U1-SL2 | G | 20 | C | 21 | C | 22 | * | G | 1 | G | 2 | C | 3 | cWW | ncWH | cWW |
31 | IL_5F5F_003 | 5F5F | 0.3286 | 0 | Isolated cWH basepair | F | RNA (20-mer) | G | 14 | G | 15 | A | 16 | * | U | 5 | G | 6 | C | 7 | cWW | cWH | cWW |
32 | IL_5F5F_001 | 5F5F | 0.3409 | 0 | Isolated cWH basepair | B | RNA (20-mer) | G | 14 | G | 15 | A | 16 | * | U | 5 | G | 6 | C | 7 | cWW | cWH | cWW |
33 | IL_3W3S_003 | 3W3S | 0.2680 | 0 | Isolated cWH basepair | B | Selenocysteine transfer RNA | A | 47|||N | G | 47|||O | C | 47|||P | * | G | 47|||A | G | 47|||B | U | 47|||C | cWW | cWH | cWW |
34 | IL_3W3S_006 | 3W3S | 0.2680 | 0 | Isolated cWH basepair | B | Selenocysteine transfer RNA | A | 47|||N|43_455 | G | 47|||O|43_455 | C | 47|||P|43_455 | * | G | 47|||A|43_455 | G | 47|||B|43_455 | U | 47|||C|43_455 | cWW | cWH | cWW |
35 | IL_4V88_405 | 4V88 | 0.3331 | 0 | Isolated cWH basepair | A6 | SSU rRNA | U | 406 | A | 407 | C | 408 | * | G | 389 | G | 390 | A | 391 | cWW | cWH | cWW |
36 | IL_3LOA_003 | 3LOA | 0.6861 | 1 | Decoding loop with one bulged A | A+B | RNA (21-mer) + RNA (23-mer) | C | 1407 | A | 1408 | C | 1409 | * | G | 1491 | A | 1493 | G | 1494 | cWW | cWW | |
37 | IL_4V88_476 | 4V88 | 0.6959 | 0 | Other IL | A6 | SSU rRNA | U | 1688 | A | 1689 | G | 1690 | * | C | 1711 | A | 1712 | G | 1713 | ncWW | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGG*CGG | 17 |
UGA*UGA | 4 |
GGG*CGC | 2 |
GGA*UGC | 2 |
AGC*GGU | 2 |
UUG*UUG | 1 |
CUG*CGG | 1 |
UGG*UGG | 1 |
CCA*UGG | 1 |
CGA*UGG | 1 |
GUA*UAAUAAGC | 1 |
GCC*GGC | 1 |
UAC*GGA | 1 |
CAC*GAAG | 1 |
UAG*CAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
G*G | 29 |
C*G | 2 |
U*U | 1 |
U*G | 1 |
U*AAUAAG | 1 |
A*G | 1 |
A*AA | 1 |
A*A | 1 |
Release history
Release | 3.17 |
---|---|
Date | 2019-04-05 |
Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated cWH basepair (32)
- Self complementary (1)
- cWH basepair with bulged bases (1)
- Decoding loop with one bulged A (1)
- Other IL (1)
- Isolated non-canonical cWW pair (1)
- Basepair signature
- cWW-cWH-cWW
- Heat map statistics
- Min 0.00 | Avg 0.35 | Max 1.06
Coloring options: