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Motif IL_12786.4 Version IL_12786.4 of this group appears in releases 3.17 to 3.17

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 61-62-53-4
1 IL_4WF9_0184WF90.79340Isolated non-canonical cWW pairX LSU rRNAU638U639G640*U705U706G707cWWcWW
2 IL_2D6F_0012D6F0.65530Self complementaryF tRNAC927U928G929*C941G942G943cWWncWWcWW
3 IL_406D_002406D0.34670Isolated cWH basepairA+ERNA (17-mer)U8||AG9||AG10||A*U25||AG26||AG27||AcWWncWHcWW
4 IL_4KQ0_0014KQ00.15210Isolated cWH basepairE+BRNA (19-mer)C15G16G17*C3G4G5cWWcWHcWW
5 IL_4KQ0_0054KQ00.15140Isolated cWH basepairB+ERNA (19-mer)C15G16G17*C3G4G5cWWcWHcWW
6 IL_6IA2_0036IA20.16480Isolated cWH basepairB+ARNA (19-mer)C9G10||AG11||A*C9G10||AG11cWWcWHcWW
7 IL_3R1D_0023R1D0.18630Isolated cWH basepairB+ARNA (11-mer)C5G6G7*C5G6G7cWWcWHcWW
8 IL_4E5C_0014E5C0.15950Isolated cWH basepairA+BRNA (19-mer)C9G10G11*C9G10G11cWWcWHcWW
9 IL_3R1C_0313R1C0.14390Isolated cWH basepairE+FRNA (8-mer)C2G3G4*C5G6G7cWWcWHcWW
10 IL_3R1C_0173R1C0.12550Isolated cWH basepairQ+RRNA (8-mer)C2G3G4*C5G6G7cWWcWHcWW
11 IL_3SJ2_0023SJ20.11450Isolated cWH basepairB+ARNA (17-mer)C10G11G12*C10G11G12cWWcWHcWW
12 IL_3R1C_0113R1C0.11160Isolated cWH basepairL+KRNA (8-mer)C5G6G7*C2G3G4cWWcWHcWW
13 IL_3R1C_0123R1C0.11360Isolated cWH basepairK+LRNA (8-mer)C5G6G7*C2G3G4cWWcWHcWW
14 IL_3R1C_0183R1C0.11810Isolated cWH basepairR+QRNA (8-mer)C2G3G4*C5G6G7cWWcWHcWW
15 IL_3SJ2_0033SJ20.10400Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C13G14G15*C7G8G9cWWcWHcWW
16 IL_3SJ2_0013SJ20.11300Isolated cWH basepairB+ARNA (17-mer)C13G14G15*C7G8G9cWWcWHcWW
17 IL_4KQ0_0034KQ00.14100Isolated cWH basepairE+BRNA (19-mer)C9G10G11*C9G10G11cWWcWHcWW
18 IL_3R1C_0323R1C0.12140Isolated cWH basepairE+FRNA (8-mer)C5G6G7*C2G3G4cWWcWHcWW
19 IL_3CZW_0023CZW0.00000Isolated cWH basepairXRNA (16-mer)U10G11A12*U7||||2_555G8||||2_555A9||||2_555cWWcWHcWW
20 IL_3CZW_0013CZW0.00000Isolated cWH basepairXRNA (16-mer)U10||||2_555G11||||2_555A12||||2_555*U7G8A9cWWcWHcWW
21 IL_4KQ0_0024KQ00.12920Isolated cWH basepairE+BRNA (19-mer)C12G13G14*C6G7G8cWWcWHcWW
22 IL_4KQ0_0044KQ00.12940Isolated cWH basepairB+ERNA (19-mer)C12G13G14*C6G7G8cWWcWHcWW
23 IL_4V88_4274V880.26020Isolated cWH basepairA6 SSU rRNAC848C849A850*U822G823G824cWWncWHcWW
24 IL_4V88_4534V880.24190Isolated cWH basepairA6 SSU rRNAC1323G1324A1325*U1290G1291G1292cWWcWHcWW
25 IL_4WF9_0454WF90.23660Isolated cWH basepairX LSU rRNAG1243G1244G1245*C1277G1278C1279cWWcWHcWW
26 IL_5J7L_0115J7L0.22910Isolated cWH basepairAA SSU rRNAG144G145G146*C176G177C178cWWcWHcWW
27 IL_3D0M_0013D0M0.17790Isolated cWH basepairXRNA (16-mer)U10||||16_545G11||||16_545A12||||16_545*U7G8A9ncWWcWHcWW
28 IL_3D0M_0023D0M0.17790Isolated cWH basepairXRNA (16-mer)U10G11A12*U7||||16_545G8||||16_545A9||||16_545ncWWcWHcWW
29 IL_2R8S_0052R8S0.44685cWH basepair with bulged basesRP4-P6 RNA RIBOZYME DOMAING134U135A136*U182A187C189cWWcWHcWW
30 IL_6F4H_0016F4H0.34450Isolated cWH basepairDU1-SL2G20C21C22*G1G2C3cWWncWHcWW
31 IL_5F5F_0035F5F0.32860Isolated cWH basepairFRNA (20-mer)G14G15A16*U5G6C7cWWcWHcWW
32 IL_5F5F_0015F5F0.34090Isolated cWH basepairBRNA (20-mer)G14G15A16*U5G6C7cWWcWHcWW
33 IL_3W3S_0033W3S0.26800Isolated cWH basepairBSelenocysteine transfer RNAA47|||NG47|||OC47|||P*G47|||AG47|||BU47|||CcWWcWHcWW
34 IL_3W3S_0063W3S0.26800Isolated cWH basepairBSelenocysteine transfer RNAA47|||N|43_455G47|||O|43_455C47|||P|43_455*G47|||A|43_455G47|||B|43_455U47|||C|43_455cWWcWHcWW
35 IL_4V88_4054V880.33310Isolated cWH basepairA6 SSU rRNAU406A407C408*G389G390A391cWWcWHcWW
36 IL_3LOA_0033LOA0.68611Decoding loop with one bulged AA+BRNA (21-mer) + RNA (23-mer)C1407A1408C1409*G1491A1493G1494cWWcWW
37 IL_4V88_4764V880.69590Other ILA6 SSU rRNAU1688A1689G1690*C1711A1712G1713ncWWncWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGG*CGG17
UGA*UGA4
GGG*CGC2
GGA*UGC2
AGC*GGU2
UUG*UUG1
CUG*CGG1
UGG*UGG1
CCA*UGG1
CGA*UGG1
GUA*UAAUAAGC1
GCC*GGC1
UAC*GGA1
CAC*GAAG1
UAG*CAG1
Non-Watson-Crick part of the motif
SequenceCounts
G*G29
C*G2
U*U1
U*G1
U*AAUAAG1
A*G1
A*AA1
A*A1

Release history

Release3.17
Date2019-04-05
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated cWH basepair (32)
  • Self complementary (1)
  • cWH basepair with bulged bases (1)
  • Decoding loop with one bulged A (1)
  • Other IL (1)
  • Isolated non-canonical cWW pair (1)
    • Basepair signature
    cWW-cWH-cWW
    Heat map statistics
    Min 0.00 | Avg 0.35 | Max 1.06
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